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Job DescriptionP0AFM2
Confidence99.43%DateThu Jan 5 11:26:43 GMT 2012
Rank22Aligned Residues196
% Identity23%Templatec3tqwA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70.........80.........90.........100.........
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Query Sequence  TVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVF
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Template Sequence  XVRVGTIAGPETQLXEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANXFQHLPYLKAQIEXR. . GYKIVSIGKT
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S
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   1........10.........20.........30.........40.........50.........60........ .70........
 
   110.........120.........130.........140.........150.........160.........170........
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Query Sequence  VNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN. . . . . . . . . . .
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Template Sequence  FVYP. XGLYSKK. . . . . . . ITALTQLK. . . . . . . . . . . . . . TGAKIAVPSDPSNEARALLLLEKAQLIQLKTHINATPXD
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SS.......
SSGGG

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GGG
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   7980.. ....... 90....... ..100.........110.........120.........130......
 
   179180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  . . . . . . TVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGF
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Template Sequence  IASNPKKLKIVELDAAQL. . . . . . SRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGP. . . . . . . . . . . . . . . . . . . . . N
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GGGG......GG
TTT
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GGGT

TTTT
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   139140.........150...... ...160.........170.........180.........190 .
 
   253......260.........270........
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Query Sequence  PVSTMHIVANKAWAEKNPAAAKLFAI
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Template Sequence  SPYANVVAVRED. . DKNDPRLKQLVS
Template Known Secondary structure  SS
GG..GTT
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   192.......200... ......210.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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