Job Description P0AFM2 Confidence 57.10% Date Thu Jan 5 11:26:43 GMT 2012 Rank 131 Aligned Residues 200 % Identity 14% Template c3oxnD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus Resolution 2.70 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	.	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F
Query Conservation																																	.
Alig confidence																																	.						.																														.	.	.	.	.	.	.	.
Template Conservation																																							.																														.	.	.	.	.	.	.	.
Template Sequence		Q	Q	C	D	Q	T	F	T	I	A	T	T	D	Y	A	X	Q	T	I	L	P	F	A	L	P	R	I	Y	Q	E	A	P	N	V	S	F	N	.	F	L	P	L	Q	H	D	R	L	S	D	Q	L	T	Y	E	G	A	D	L	A	I	C	R	P	T	G	P	V	.	.	.	.	.	.	.	.	E	P	L	R	S
Template Known Secondary structure			S																T														T	T					.						G	G	G							T	S			S							S	S			.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																							.																														.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.									.	.	180	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N
Query Conservation
Alig confidence									.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	L	G	R	V	G	.	.	.	.	V	L	C	L	L	S	K	Q	H	P	L	A	N	Q	E	X	S	L	D	D	Y	L	S	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	X	I	A	I	S	D	G	V	K	A	L	I	E	Q	A	L	I	D	K	P	Q	R	K	X	V	L	R	A
Template Known Secondary structure									.	.	.	.							T	T	S	G	G	G	S	S										S		.	.	.	.	.	.	.	.	.	.	.	.	.	.					S													T	S	S	S
Template Predicted Secondary structure									.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.															.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K
Query Conservation
Alig confidence				.	.	.	.	.																	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.																	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	H	.	.	.	.	.	L	E	A	A	L	A	I	V	D	T	L	P	I	I	I	T	.	.	.	V	P	A	D	L	A	Y	L	V	A	E	R	Y	D	L	V	V	K	P	L	P	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	P	F	D	Y	S	X	I	W	H	A
Template Known Secondary structure		S		.	.	.	.	.									T	T	S						.	.	.														T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												G
Template Predicted Secondary structure				.	.	.	.	.																	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																				.	.	.	.	290	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	R	C	E	H	S	P	A	Q	E	W	L	R	S	V	V
Template Known Secondary structure		.	G	G	T	T
Template Predicted Secondary structure		.
Template SS confidence
			298	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions