Job Description P0AFM2 Confidence 62.65% Date Thu Jan 5 11:26:43 GMT 2012 Rank 123 Aligned Residues 154 % Identity 16% Template c3ombA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis Resolution 2.10 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																				.																													.	.	.													.
Query SS confidence																				.																													.	.	.													.
Query Sequence		A	D	L	P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	.	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	.	.	.	N	V	G	Y	T	S	L	A	S	G	D	A	.	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A
Query Conservation																				.																													.	.	.													.
Alig confidence																				.																													.	.	.													.										.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		T	T	A	D	G	K	P	I	V	T	V	L	V	K	K	N	A	N	Q	E	K	X	A	N	X	Q	W	A	K	D	L	E	A	D	C	D	C	K	I	E	W	Q	E	V	T	R	E	A	W	A	Q	Q	K	N	A	T	L	A	S	G	D	I	A	D	V	N	L	N	G	Y	G	A	.	.	.	.	.	V	E	A
Template Known Secondary structure		B		T	T			B										T	T	B			G	G	G												T	S																							T				S				S	S			T	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.						.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.									.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.
Query Sequence		A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	.	.	.	.	.	.	.	.	I	N
Query Conservation																																																																								.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	Q	Y	P	G	X	F	E	D	L	S	K	D	L	D	K	L	.	.	.	.	.	.	P	N	V	K	A	F	F	K	Q	K	P	D	A	K	K	X	S	T	D	S	.	.	.	.	.	.	.	.	.	.	.	K	G	R	I	Y	A	I	A	D	G	R	G	K	A	Y	S	G	T	G	Q	H	X	L	I	N	K
Template Known Secondary structure				S	T	T	S	B			G	G	G	G	G	G	G		.	.	.	.	.	.																				T	.	.	.	.	.	.	.	.	.	.	.	T	S			S	S							G	G	G		S		S
Template Predicted Secondary structure																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P
Query Conservation
Alig confidence												.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		A	W	L	D	K	L	G	L	Q	V	.	.	.	.	.	.	P	T	T	W	D	E	L	E	N	V	L	K	A	F	K	T	Q	D	P
Template Known Secondary structure								T				.	.	.	.	.	.			B														S		T
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions