Job Description P0AFM2 Confidence 98.61% Date Thu Jan 5 11:26:43 GMT 2012 Rank 31 Aligned Residues 225 % Identity 11% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	.	.	.	.	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.
Template Conservation
Template Sequence		D	Q	P	V	I	N	F	G	I	I	S	T	E	S	S	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	G	Y	Q	V	K	A	F	F	A	P	D	Y	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G	N	K	A	A	X	E	A	V	D	R	A	H	G	E	I	F	A
Template Known Secondary structure													S	S																					S	S								S	S										T	T	S		S																S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	.	.	.	.	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N
Query Conservation																																		.	.	.	.
Alig confidence																							.	.	.	.								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	D	S	.	.	.	.	K	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	F	G	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D	P	N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P
Template Known Secondary structure						T	T			S										T	T		.	.	.	.	S			S							T	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.				T	T		T	T	T	T							T	T	T	T	T	T
Template Predicted Secondary structure																							.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.													.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	.	.	.	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S
Query Conservation																																													.	.	.
Alig confidence						.																																							.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	A	F	.	K	R	T	L	N	S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	K	S	P	L	I	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	.	S																T	T	S	S	S																					T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	.	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q
Query Conservation																		.
Alig confidence		.	.															.
Template Conservation		.	.
Template Sequence		.	.	P	L	V	W	R	N	N	L	S	D	E	Q	K	N	K	L	R	D	F	F	F	K	Y	G	A	N	A	E	Q	K	K	V	L
Template Known Secondary structure		.	.						T	T	S																		S
Template Predicted Secondary structure		.	.
Template SS confidence
				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions