Job Description P0AFM2 Confidence 97.52% Date Thu Jan 5 11:26:43 GMT 2012 Rank 34 Aligned Residues 227 % Identity 13% Template c3muqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	T	V	N	P	V	Q	S	T	I	T	E	E	T	.	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G
Query Conservation																.
Alig confidence																.																			.																									.	.	.	.
Template Conservation																																			.																									.	.	.	.
Template Sequence		E	H	V	R	L	A	T	T	T	S	T	Y	H	S	G	L	L	D	Y	L	L	P	Q	F	E	K	D	T	G	Y	K	V	D	.	V	I	A	A	G	T	G	K	A	L	K	X	G	E	N	G	D	V	D	L	V	X	T	H	.	.	.	.	A	P	K	A	E	G	T	F	V	E	K	G	Y	G	V	L	P	R
Template Known Secondary structure																T	G	G	G	G	T														.															T	T	S	S	S						.	.	.	.											T	T	S
Template Predicted Secondary structure																																			.																									.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y
Query Conservation
Alig confidence							.														.	.																				.	.	.	.	.
Template Conservation							.														.	.																				.	.	.	.	.
Template Sequence		K	L	X	Y	N	.	D	F	V	I	V	G	P	K	A	D	P	A	K	.	.	I	K	D	D	E	S	V	L	D	V	F	K	E	I	A	N	K	N	A	.	.	.	.	.	T	F	I	S	R	G	D	D	S	G	T	H	K	K	E	X	G	F	W	A	Q	T	K	I	E	P	N	F	G	G	Y	R	S	V	G
Template Known Secondary structure							.								T	T		T	T		.	.		T	T		S												T	T		.	.	.	.	.							S		S														T					S	T	T
Template Predicted Secondary structure							.														.	.																				.	.	.	.	.
Template SS confidence
		102	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E
Query Conservation
Alig confidence																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	X	G	P	T	L	N	X	A	S	E	X	Q	G	Y	T	X	S	D	R	G	T	W	L	A	Y	Q	N	K	L	.	.	.	.	D	L	E	I	L	F	Q	G	D	E	K	L	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	Q	V	I	L	V	N	P	E	R	Y	P	T
Template Known Secondary structure															T														G	G	G		.	.	.	.	S									G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T		T	T
Template Predicted Secondary structure																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.																		.	220	.	.	.	.	.	.	.	.	.	230	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	Y	Q	G	A	K	A	F	S	D	W	L	V	N	P	R	G	Q	E	L	I
Template Known Secondary structure		S														S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions