Job Description P0AFM2 Confidence 96.33% Date Thu Jan 5 11:26:43 GMT 2012 Rank 50 Aligned Residues 136 % Identity 13% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K
Query Conservation
Alig confidence																				.																																	.	.	.	.	.	.	.	.
Template Conservation																				.																																	.	.	.	.	.	.	.	.
Template Sequence		F	D	I	D	L	X	Q	E	I	C	R	R	L	H	A	T	C	T	.	F	E	A	Y	I	F	D	D	L	F	P	A	L	K	N	R	E	V	D	L	V	I	A	S	X	I	I	T	D	E	R	K	.	.	.	.	.	.	.	.	K	H	F	I	F	S	L	P	Y	X	E	S	N	S	Q	Y	I	T	T	V	D
Template Known Secondary structure															T					.						G	G	G							T	T	S	S	S				S	S		B							.	.	.	.	.	.	.	.	T	T							S	B										T	T
Template Predicted Secondary structure																				.																																	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K
Query Conservation
Alig confidence			.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.	.	.
Template Conservation			.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.	.	.
Template Sequence		S	.	.	.	.	K	I	S	T	F	D	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	K	K	I	G	V	R	K	G	T	P	Y	A	R	.	.	.	.	Q	V	L	S	E	N	R	N	N	Q	V	I	F	Y	E	L	.	.	.	.	.	I	Q	D	X	L	L	G	L	S	N	N	Q
Template Known Secondary structure			.	.	.	.	S			S	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T	S	T				.	.	.	.					T		S								S	S	.	.	.	.	.										T	T	S
Template Predicted Secondary structure			.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.	.	.
Template SS confidence
		116					.	.	.	120	.	.	.	.																.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	Y	Y	T	W	T	P	Y	W	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	A	S	L	X	D	Y	E	A	A	K	Y
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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