Job Description P0AFM2 Confidence 96.62% Date Thu Jan 5 11:26:43 GMT 2012 Rank 45 Aligned Residues 225 % Identity 11% Template c3kn3C_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes Resolution 2.41 Å

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		31	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		V	N	P	V	Q	S	T	I	T	E	E	T	.	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F
Query Conservation														.
Alig confidence														.																			.																									.	.	.	.
Template Conservation																																	.																									.	.	.	.
Template Sequence		L	R	X	A	T	T	T	S	T	D	N	T	G	L	L	D	V	L	A	P	A	Y	K	K	D	T	G	V	D	L	K	.	W	V	A	V	G	T	G	N	A	L	K	L	G	E	N	C	D	V	D	V	V	F	V	H	.	.	.	.	A	P	K	V	E	L	E	Y	V	E	K	G	F	G	I	D	R	T	P	V
Template Known Secondary structure																																	.															T	T			S					S	.	.	.	.											T	T	S
Template Predicted Secondary structure																																	.																									.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																			.					.	.	.																																												.
Query SS confidence																			.					.	.	.																																												.
Query Sequence		V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	.	Y	K	I	T	.	.	.	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	.	Y	E	L	T	N	T	V	T	H	N	Q
Query Conservation																			.					.	.	.																																												.
Alig confidence					.														.					.	.	.										.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation					.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	Y	N	.	D	F	V	I	I	G	N	P	S	F	K	Q	K	F	T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	K	E	S	W	Y
Template Known Secondary structure					.								G	G	G	T	T	T	T	T	T													T	T	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S															S	S			T	T		T	T
Template Predicted Secondary structure					.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.													.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	E	A	G	Q	G	X	L	A	T	I	N	I	A	E	E	Q	K	G	L	T	L	T	D	R	G	T	F	I	K	Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	S	I	X	A	V	N	P	K	R
Template Known Secondary structure						S												T	T		B														T	S		S	S		S									G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.																	.	200	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	E	K	A	D	Y	K	G	A	K	Q	F	I	D	W	I	V	S	E	K	X	Q	A	E	I
Template Known Secondary structure			T	T	S													T	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions