Job Description P0AFM2 Confidence 91.26% Date Thu Jan 5 11:26:43 GMT 2012 Rank 72 Aligned Residues 179 % Identity 11% Template c3k4uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding component of abc transporter; PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine Resolution 2.62 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K
Query Conservation
Alig confidence																				.																																	.	.	.	.	.	.	.	.
Template Conservation																				.																																	.	.	.	.	.	.	.	.
Template Sequence		F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	.	L	V	P	T	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X	T	I	S	Q	E	R	N	.	.	.	.	.	.	.	.	L	R	V	N	F	V	E	P	Y	I	V	V	G	Q	S	L	L	V	K	K	G
Template Known Secondary structure															T					.						G	G	G							T	T	S		S				S	S		B							.	.	.	.	.	.	.	.	T	T	S				S		S											T	T
Template Predicted Secondary structure																				.																																	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.									.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K
Query Conservation
Alig confidence						.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Conservation						.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Sequence		L	E	K	G	.	.	V	K	S	Y	K	D	L	D	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	L	F	K	N	A	K	L	K	T	Y	D	T	.	.	.	.	.	E	A	E	A	V	Q	E	V	L	N	G	K
Template Known Secondary structure		T	T	T	T	.	.			S	G	G	G	G			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S											S	S	S						S	S	.	.	.	.	.										S	S	S
Template Predicted Secondary structure						.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		99	100	.	.			.	.	.	.	.	.	.	110	.	.	.																		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Sequence		A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	P	L	G	W	A	I	K	K	.	.	.	.	G	D	P	D	F	L	N	W	L	N	H
Template Known Secondary structure		S																	T	T	T	T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	.	.	.	.	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																					.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions