Job Description P0AFM2 Confidence 63.65% Date Thu Jan 5 11:26:43 GMT 2012 Rank 119 Aligned Residues 181 % Identity 14% Template c3hv1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus Resolution 1.90 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K
Query Conservation
Alig confidence																				.																																	.	.	.	.	.	.	.	.
Template Conservation																				.																																	.	.	.	.	.	.	.	.
Template Sequence		F	D	I	D	L	A	N	A	V	F	K	L	Y	G	I	D	V	E	.	W	Q	A	I	D	W	D	X	K	E	T	E	L	K	N	G	T	I	D	L	I	W	N	G	Y	S	V	T	D	E	R	K	.	.	.	.	.	.	.	.	Q	S	A	D	F	T	E	P	Y	X	V	N	E	Q	V	L	V	T	K	K	S
Template Known Secondary structure													T	T	T					.						G	G	G								T	S		S				S	S		B							.	.	.	.	.	.	.	.	T	T																		G	G
Template Predicted Secondary structure																				.																																	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K
Query Conservation
Alig confidence			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	.	.	.	.	G	I	D	S	V	A	G	X	A	G	K	T	L	G	A	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	S	G	Y	D	A	F	N	A	S	P	K	I	L	K	D	V	V	A	N	Q	K	V	V	Q	Y	S	T	F	T	Q	A	L	I	D	L	N	S	G	R
Template Known Secondary structure		G	.	.	.	.				S	S	G	G	G	T	T							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											T	T	T	T	T	T	T	S	G	G	G						S	S											T	S
Template Predicted Secondary structure			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		P	V	F	Y	Y	T	W	T	P	Y	.	.	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I
Query Conservation												.	.
Alig confidence												.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		I	D	G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	K	S	G	V	L	D	Q	Y	N	V	X	P	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	G	E	S	F	A	V	G	A	R	K	.	.	.	.	V	D	K	T	L	I	K	K	I	N	Q
Template Known Secondary structure			S																T	T		G	G	G							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	.	.	.	.	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.																						.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions