Job Description P0AFM2 Confidence 95.45% Date Thu Jan 5 11:26:43 GMT 2012 Rank 52 Aligned Residues 237 % Identity 11% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.							.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																					.																					.	.	.	.	.	.
Query SS confidence																																					.																					.	.	.	.	.	.
Query Sequence		A	A	D	L	P	G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	.	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	.	.	.	.	.	.	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M
Query Conservation																																					.																					.	.	.	.	.	.
Alig confidence																	.	.																			.						.															.	.	.	.	.	.											.	.	.	.
Template Conservation																	.	.																									.																															.	.	.	.
Template Sequence		A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	.	.	S	L	D	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	.	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	.	.	.	.	A	M	D	L
Template Known Secondary structure			T	T			T	T									.	.		S																	T	T					.																			T	T			B		S					S	.	.	.	.
Template Predicted Secondary structure																	.	.																									.																															.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	.	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.															.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	.	.	.	.	K	E	V	H	G	R	I	A
Template Known Secondary structure								T	T	S							T	T	G	G	G	S		G	G	G			T	T	T					B										G	G	G		S	S	S					S											T		.	.	.	.				T	T
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	.	.	.	.	.	.	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y	N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P
Template Known Secondary structure					T	T	T																T	T											T	T					S											T	T	S		S															T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		K	D	Y	T	V	V	M	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	L	V	P	E	A	.	.	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M
Template Known Secondary structure		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	.	.	B	S	S													S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.																				.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions