Job Description P0AFM2 Confidence 96.81% Date Thu Jan 5 11:26:43 GMT 2012 Rank 40 Aligned Residues 244 % Identity 15% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

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		30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure								.	.	.																																	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																																	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	N	P	V	Q	.	.	.	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	.	.	.	.	.	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.																																	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																																	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	K	F	G	M	N	A	G	T	S	S	N	E	Y	K	A	A	E	M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V	F	A	L
Template Known Secondary structure								S	S		T	T	S																	T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F	G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	G	T	R	Q	T	T	S	N	R	A	.	.	.	.	.	.	.	I	N	S	I	A	D	M	K	G	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S		S										S	S																																S	S		.	.	.	.	.	.	.			S	G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.
Template Conservation										.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.
Template Sequence		K	L	R	V	P	N	A	A	.	.	.	.	.	.	.	T	N	L	A	Y	A	K	Y	V	G	A	S	P	T	P	M	A	.	.	.	.	.	.	.	.	F	S	E	V	Y	L	A	L	Q	T	N	A	V	D	G	Q	E	N	.	.	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	F	L	A	M	T
Template Known Secondary structure							S			.	.	.	.	.	.	.									T	T								.	.	.	.	.	.	.	.	G	G	G							T	T	S	S	S					.	.								T	T	G	G	G	S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		145	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.										.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.									.
Query SS confidence																																											.	.	.	.	.	.	.	.	.									.
Query Sequence		F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	.	.	.	.	.	.	.	.	.	A	A	K	L	F	A	I	M	.	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E
Query Conservation																																											.	.	.	.	.	.	.	.	.									.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.									.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	H	I	L	N	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	L	V	S	N	E	T	Y	K	E	L	P	E	D	L	Q	K	V	V	K	D	A	A	E	N	A	A	K	Y	H	T	K	L	F	V	D	G	E	K	D	L	V	T	F	F	E	K	Q	G	V	K	I
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S																																					T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.																					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
											301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E	A	L	A	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	H	P	D	L	V	P	F	K	E	S	M	K	P	Y	Y	A	E	F	V	K	Q	T	G	Q	K	G	E	S	A	L	K	Q	I	E	A	I	N
Template Known Secondary structure						S							T																								T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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