Job Description P0AFM2 Confidence 96.68% Date Thu Jan 5 11:26:43 GMT 2012 Rank 44 Aligned Residues 253 % Identity 11% Template c2vpnB_ PDB info PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata Resolution 1.55 Å

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		29	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure									.	.	.																															.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.																															.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	V	N	P	V	Q	.	.	.	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	.	.	.	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.																															.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																															.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	W	R	Y	A	H	E	E	Y	E	G	D	V	Q	D	V	F	A	Q	A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	G	E	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q	I	F	F	I	P
Template Known Secondary structure									S	S		T	T	S																	S	S								T	T	S	S		S										T	T	S		S										T	T	T	S	G	G	G	G	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I	N	E	M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	.	.	.	.	.	.	.	I	T	S	P	E	D	F	D	N	K	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S		S	S																T								T	T	T																	S	S		.	.	.	.	.	.	.			S	G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template Conservation										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template Sequence		K	I	R	T	M	T	N	P	.	.	.	.	.	.	.	L	L	A	E	T	Y	K	A	F	G	A	.	.	.	.	.	.	.	.	T	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	G	I	I	D	G	Q	E	N	.	.	P	I	F	W	I	E	S	G	G	L	Y	E	V	S	P	N	L	T	F	T
Template Known Secondary structure							S			.	.	.	.	.	.	.										T		.	.	.	.	.	.	.	.							G	G	G								T	S		S					.	.								T	T	G	G	G	T
Template Predicted Secondary structure										.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		142	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160									.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260											.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	.	.	.	.	.	.	.	.	.	.	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	.	.	.	.	.	.	.	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M
Query Conservation																																.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence										.	.	.																				.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		S	H	G	W	F	T	T	A	.	.	.	M	M	A	N	Q	D	F	Y	E	G	L	S	E	E	D	Q	Q	L	V	Q	D	A	A	D	A	A	Y	D	H	T	I	E	H	I	K	G	L	S	E	E	S	L	E	K	I	K	A	A	S	D	E	V	T	V	T	R	L	N	D	E	Q	I	Q	A	F	K	E	R	A
Template Known Secondary structure										.	.	.											S																								T	T														T	T																T	T
Template Predicted Secondary structure										.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E	A	L	A	A	Q	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	Q	V	E	E	K	F	I	E	M	T	G	E	Q	G	Q	E	L	L	D	Q	F	K	A	D	L	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions