Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFM2
Confidence80.51%DateThu Jan 5 11:26:43 GMT 2012
Rank101Aligned Residues188
% Identity16%Templatec2v25B_
PDB info PDB header:receptorChain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate
Resolution1.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50..... ....60.........70.........80.........90.........100.........110.........
Predicted Secondary structure 
...





















Query SS confidence 












. . .































































Query Sequence  FQTLLVSRALEKL. . . GYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLI
Query Conservation 
   
   


  ...

 
             

  
 


  
 
 
              
  
         

 
Alig confidence 












...




.































........

















Template Conservation    


   

  
        .                                ........                  
Template Sequence  FEVDVAKLLAKSILGDDKKIK. LVAVNAKTRGPLLDNGSVDAVIATFTITPERK. . . . . . . . RIYNFSEPYYQDAIGLLV
Template Known Secondary structure  S
TTS.

TTTTTS
S
SS
B

........TT
S
S
Template Predicted Secondary structure 



.










........








Template SS confidence 















































































   38.40.........50........ .60.........70.........80.........90 .........100........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  DKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYK
Query Conservation 
   
   

 

 

     
           
  
   
          

  

         
     
    
  
Alig confidence 



....







...............


































.....








Template Conservation      ....        ...............                                   .....       
 
Template Sequence  LKEK. . . . KYKSLADM. . . . . . . . . . . . . . . KGANIGVAQAATTKKAIGEAAKKIGIDVKFSEFPD. . . . . YPSIKAALD
Template Known Secondary structure  GGG....


SGGGG...............TT
TT
ST


SS.....
Template Predicted Secondary structure 



....





...............
















.....
Template SS confidence 















































































   109110.. .......120 .........130.........140.........150..... ....160....
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  EGKPVFYYTWTPYWVSNELKPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLFAIM
Query Conservation   
   
   
 
           

  
 

                      
   
  
    
    
     
   
Alig confidence 



















...







.....................












....










Template Conservation   
 

               ...        .....................           
 ....   
   

  
Template Sequence  AKRVDAFSVDKSILLGYVDD. . . KSEILPDS. . . . . . . . . . . . . . . . . . . . . FEPQSYGIVTKKD. . . . DPAFAKYVDDF
Template Known Secondary structure  TTSSSTTT

T...T
S

.....................
S

TT....
Template Predicted Secondary structure 





...







.....................







....
Template SS confidence 















































































   165....170.........180.... .....190.. .......200..... ....210......
 
   280.........290..
Predicted Secondary structure  ..


Query SS confidence  . .












Query Sequence  . . QLPVADINAQNAI
Query Conservation  ..         
   
Alig confidence  ..

.









Template Conservation 
  
. 
    
  
Template Sequence  VKEH. KNEIDALAKK
Template Known Secondary structure  T.
Template Predicted Secondary structure  .
Template SS confidence 














   217..220 .........230
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions