Job Description P0AFM2 Confidence 80.51% Date Thu Jan 5 11:26:43 GMT 2012 Rank 101 Aligned Residues 188 % Identity 16% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	.	.	.	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I
Query Conservation															.	.	.
Alig confidence															.	.	.						.																																	.	.	.	.	.	.	.	.
Template Conservation																							.																																	.	.	.	.	.	.	.	.
Template Sequence		F	E	V	D	V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	.	L	V	A	V	N	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T	F	T	I	T	P	E	R	K	.	.	.	.	.	.	.	.	R	I	Y	N	F	S	E	P	Y	Y	Q	D	A	I	G	L	L	V
Template Known Secondary structure																S		T	T	S			.						T	T	T							T	T	S		S				S	S		B							.	.	.	.	.	.	.	.	T	T					S		S
Template Predicted Secondary structure																							.																																	.	.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K
Query Conservation
Alig confidence						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template Sequence		L	K	E	K	.	.	.	.	K	Y	K	S	L	A	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	A	N	I	G	V	A	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	I	D	V	K	F	S	E	F	P	D	.	.	.	.	.	Y	P	S	I	K	A	A	L	D
Template Known Secondary structure			G	G	G	.	.	.	.				S	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T		S													T									S	S	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.
Template SS confidence
		109	110	.	.					.	.	.	.	.	.	.	120																.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M
Query Conservation
Alig confidence																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		A	K	R	V	D	A	F	S	V	D	K	S	I	L	L	G	Y	V	D	D	.	.	.	K	S	E	I	L	P	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	P	Q	S	Y	G	I	V	T	K	K	D	.	.	.	.	D	P	A	F	A	K	Y	V	D	D	F
Template Known Secondary structure		T	T	S	S	S										T	T	T			T	.	.	.	T					S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										T	T	.	.	.	.
Template Predicted Secondary structure																						.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.																						.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.
				280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	Q	L	P	V	A	D	I	N	A	Q	N	A	I
Query Conservation		.	.
Alig confidence		.	.			.
Template Conservation						.
Template Sequence		V	K	E	H	.	K	N	E	I	D	A	L	A	K	K
Template Known Secondary structure					T	.
Template Predicted Secondary structure						.
Template SS confidence
		217	.	.	220		.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions