Job Description P0AFM2 Confidence 100.00% Date Thu Jan 5 11:26:43 GMT 2012 Rank 2 Aligned Residues 273 % Identity 19% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		E	S	C	G	T	V	R	F	S	D	V	G	W	T	D	I	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	.	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y	R	E	D	K	S	V	E	T
Template Known Secondary structure					S								S		T	T															T	T					.										T	S	S	T	T	T	T											S	T	T										T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	.	N	T	V	T	H	N	Q
Query Conservation																																																																										.
Alig confidence																							.													.	.	.	.	.	.	.	.																															.
Template Conservation																							.													.	.	.	.	.	.	.	.
Template Sequence		V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	.	G	I	K	D	F	K	D	I	A	A	H	K	.	.	.	.	.	.	.	.	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E
Template Known Secondary structure																							.	T			B	T	T	S	S	G	G	G		.	.	.	.	.	.	.	.	T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure																							.													.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.									.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A
Query Conservation
Alig confidence																																				.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	M	N	A	N	F	.	.	.	.	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	G	G	A	T	V	H	T	N	V	R	A	G
Template Known Secondary structure															T	T	T	T										S	S	G	G	G	G	T	S	.	.	.	.						B	S			S	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T										T	T
Template Predicted Secondary structure																																				.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.															.	230	.	.	.	.	.	.	.	.	.	240	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E	A	L	A	A	Q
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	S	F	S	L	Q	M	E	N	E	I	M	G	K	I	L	.	.	.	N	D	G	E	D	P	E	K	A	A	A	A	W	L	K	D	N	P	Q	S	I	E	P	W	L	S	G	V	A	T	K	D
Template Known Secondary structure						S								T	T													T	T	T	S	.	.	.	S	S				T	T					T	T	S	S	S	S	T	T	T	T	G	G	G		T	T				S	S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions