Job Description P0AFM2 Confidence 92.83% Date Thu Jan 5 11:26:43 GMT 2012 Rank 64 Aligned Residues 141 % Identity 11% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.											.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	.	.	.	.	.	.	.	.	.	.	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		D	L	L	E	Q	L	A	E	D	M	N	F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	.	.	.	.	.	.	.	.	Q	V	I	D	F	T	S	P	F	F	S	T	S	L
Template Known Secondary structure												T									T	T								T	T												T	S		S				S	S		B							.	.	.	.	.	.	.	.	T	T	S				S		S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.									.	.	.	.	.	.	.	.	140	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L	H	H	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	.	.	.	.	.	T	P	D	G	V
Template Known Secondary structure							T	T	S					S	T	T						S			T	.	.	.	.	.	.	.	.	.	.	.	.	T						B	T	T	S																		G	G	G		B	S	S	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.													170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.						.	.	.	.	.
		196	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		S	R	Y	K	E	G	K	P	.	.	V	F	Y	Y	T	W	T	P
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A
Template Known Secondary structure						S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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