Job Description P0AFM2 Confidence 93.86% Date Thu Jan 5 11:26:43 GMT 2012 Rank 59 Aligned Residues 249 % Identity 13% Template c2qryD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein Resolution 2.25 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																															.	.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence		L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	.	.	.	.	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	.	.	.	.	.	.	.	.
Query Conservation																															.	.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.												.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		V	V	K	K	A	F	E	A	D	C	N	C	E	L	K	L	V	A	L	E	D	G	V	S	L	L	N	R	L	R	X	E	G	K	N	S	K	A	D	V	V	L	G	L	.	.	.	.	D	N	N	L	L	D	A	A	S	K	T	G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N
Template Known Secondary structure										S	S		S								S													G	G	G				S						.	.	.	.		G	G	G						T	T	T		B							T	T	S				T	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
											114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	.	.	.	.	.	N	T
Query Conservation		.	.	.	.	.	.	.	.	.																																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.														.													.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																								.													.	.	.	.	.	.	.	.
Template Sequence		D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	.	P	P	Q	S	L	K	E	L	V	E	S	D	.	.	.	.	.	.	.	.	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	X	Q	K	V	Y	G	D	D	A	P	Q	A	W	Q	K
Template Known Secondary structure		S	S															T	T	T		S	S	.			S	S								S	.	.	.	.	.	.	.	.	S									T	T	T																G	G	G
Template Predicted Secondary structure																								.													.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	K	K	T	V	T	V	T	K	G	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A
Template Known Secondary structure				T	T						S	S										T	T	S		S						T	T																				T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																			.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.														.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	I	K	A	H	Q	Q	Q	F	.	D	G	W	V	N	E	A
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence							.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation							.	.
Template Sequence		A	R	T	A	A	.	.	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	X	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	X	Y	P	V	A	N	V	T	L	P	A	G	F	E	K	L	T	K	P	A	T	T	L	E	F	T	P	A	E	V	A	A	Q	R	Q	A	W	I	S	E	W	Q	R	A	V
Template Known Secondary structure				B	T	T	.	.		S													T	S					T	T					T		S			S	S						T	T	G	G	G	S				S	S
Template Predicted Secondary structure							.	.
Template SS confidence
		248	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		326	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		326	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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