Job Description P0AFM2 Confidence 92.28% Date Thu Jan 5 11:26:43 GMT 2012 Rank 65 Aligned Residues 184 % Identity 15% Template c2q89A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative abc transporter amino acid-binding protein; PDBTitle: crystal structure of ehub in complex with hydroxyectoine Resolution 2.30 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.
Template Sequence		A	A	P	D	V	A	R	E	I	F	K	R	L	G	V	A	D	V	V	A	S	I	S	E	Y	G	A	M	I	P	G	L	Q	A	G	R	H	D	A	I	T	A	G	L	F	M	K	P	E	R	C	.	.	.	.	.	.	.	.	A	A	V	A	Y	S	Q	P	I	L	C	D	A	E	A	F	A	L	K	K	G
Template Known Secondary structure														T	T											G	G	G							T	T	S		S				S			B							.	.	.	.	.	.	.	.	T	T	S				S													T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.									.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K
Query Conservation
Alig confidence						.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation						.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Sequence		N	P	L	G	.	.	L	K	S	Y	K	D	I	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	D	A	K	I	G	A	P	G	G	G	T	E	E	K	L	A	L	E	A	G	V	P	R	D	R	V	I	V	V	P	D	G	Q	S	G	L	.	.	.	.	K	M	L	Q	D	G	R
Template Known Secondary structure			T	T		.	.			B						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							T	T	S										T			G	G	G					S	S						.	.	.	.						T	S
Template Predicted Secondary structure						.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template SS confidence
		108	.	110	.			.	.	.	.	.	.	.	.	120																	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		I	D	V	Y	S	L	P	V	L	S	I	N	D	L	V	S	K	A	N	D	P	N	V	E	V	L	A	P	V	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	V	Y	C	D	G	A	A	F	R	K	G	.	.	.	.	D	E	A	L	R	D	A	F	D	V
Template Known Secondary structure			S																	T		T	T						S		B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						B						G	G	.	.	.	.	G
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																			.	.	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions