Job Description P0AFM2 Confidence 70.37% Date Thu Jan 5 11:26:43 GMT 2012 Rank 109 Aligned Residues 157 % Identity 14% Template c2q2aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:artj; PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus Resolution 1.79 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.										.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.						.	.	.	.	.	.	.	.	.
Query SS confidence																				.						.	.	.	.	.	.	.	.	.
Query Sequence		T	F	A	A	D	L	P	G	K	G	I	T	V	N	P	V	Q	S	.	T	I	T	E	E	.	.	.	.	.	.	.	.	.	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P
Query Conservation																				.						.	.	.	.	.	.	.	.	.
Alig confidence																				.						.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																						.
Template Sequence		S	S	G	G	D	G	G	A	T	K	K	K	V	V	V	G	T	D	A	A	F	A	P	F	E	Y	M	Q	K	G	K	I	V	G	F	D	V	D	L	L	D	A	V	M	K	A	A	G	L	D	Y	E	.	L	K	N	I	G	W	D	P	L	F	A	S	L	Q	S	K	E	V	D	M	G	I	S	G	I	T	I
Template Known Secondary structure			T	T	S		T	T	S	S												B	T	T	T	B				T	T				S													T	T					.																T	S	S					S	S		B
Template Predicted Secondary structure																																																						.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	E	R	K	.	.	.	.	.	.	.	.	Q	S	Y	D	F	S	D	P	Y	F	E	A	T	Q	V	I	L	V	K	Q	G	S	.	.	.	.	P	V	K	N	A	L	D	L	K	G	K	T	I	G	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	T	T	G	Q	E
Template Known Secondary structure							.	.	.	.	.	.	.	.	T	T					S													T	T		.	.	.	.				S	G	G	G	G	T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																			.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P
Query Conservation
Alig confidence																			.	.	.	.	.
Template Conservation																			.	.	.	.	.
Template Sequence		A	A	E	K	L	F	G	K	G	P	H	I	K	K	F	E	T	.	.	.	.	.	T	V	V	A	I	M	E	L	L	N	G	G	V	D	A	V	I	T	D	N	A
Template Known Secondary structure									S	S	T	T					S	S	.	.	.	.	.										T	T	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions