Job Description P0AFM2 Confidence 96.77% Date Thu Jan 5 11:26:43 GMT 2012 Rank 41 Aligned Residues 239 % Identity 11% Template c2pfyA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.95 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																											.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.																											.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	I	T	V	N	P	V	Q	S	T	I	T	E	E	.	.	.	.	T	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	.	.	.	.	.	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.																											.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.						.	.	.	.																											.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		A	T	S	W	T	X	T	A	.	E	Q	P	D	A	N	Y	L	T	Q	N	A	R	Q	F	A	D	E	V	K	A	A	T	A	G	A	L	E	I	K	V	Q	S	N	S	T	L	L	K	R	P	E	V	K	R	G	V	Q	Q	G	V	V	Q	I	G	E	V	L	V	S	A	L	G	N	E	D	P	L	F	E	I
Template Known Secondary structure										.	S	S		T	T	S																	T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S						G	G	G	G	T	T	T		G	G	G	G	G
Template Predicted Secondary structure										.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
																	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	V	P	F	L	A	S	S	F	N	E	S	E	K	L	W	K	A	T	R	P	L	L	A	Q	R	L	D	K	Q	G	I	V	L	V	Y	G	S	P	W	P	P	Q	G	I	Y	T	K	K	P	.	.	.	.	.	.	.	V	A	A	L	A	D	L	K	G	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	S	T	T	T	S		S																					T	T	T																	S	S		.	.	.	.	.	.	.		S	S	G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template Conservation									.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template Sequence		R	F	R	A	Y	S	A	.	.	.	.	.	.	.	.	S	T	S	H	X	A	A	L	X	G	A	.	.	.	.	.	.	.	.	V	P	T	T	V	Q	T	P	E	V	P	Q	A	F	S	T	G	V	I	D	A	X	L	T	.	.	S	P	A	T	G	V	D	S	Q	A	W	D	Y	V	K	Y	Y	Y	D	A
Template Known Secondary structure							S		.	.	.	.	.	.	.	.									T	T	S	.	.	.	.	.	.	.	.							G	G	G							T	T	S		S	B				.	.								T	T	G	G	G	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		141	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.									.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280											.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.										.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	.	A	A	K	L	F	A	I	M	Q	.	.	.	.	.	.	.	.	.	.	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S
Query Conservation																																											.										.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.										.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	F	I	P	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	I	A	N	K	R	A	F	Q	R	L	P	A	E	V	R	Q	A	V	L	D	A	G	A	K	A	E	I	R	G	W	Q	T	A	R	A	K	T	R	E	L	T	D	T	L	A	R	N	G	X	S	V
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S																																					T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.																					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	D	I	Q	G	H	V	D	G	W	I	K	A	H	Q	Q	Q	F	D	G	W	V	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	L	P	P	Q	L	A	K	E	L	Q	A	I	G	A	T	X	V	S	D	W	S	K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions