Job Description P0AFM2 Confidence 48.97% Date Thu Jan 5 11:26:43 GMT 2012 Rank 144 Aligned Residues 177 % Identity 15% Template c2ieeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable abc transporter extracellular-binding PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574. Resolution 2.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K
Query Conservation
Alig confidence																				.																																	.	.	.	.	.	.	.	.
Template Conservation																				.																																	.	.	.	.	.	.	.	.
Template Sequence		Y	E	V	E	V	V	R	E	A	A	K	R	L	G	L	K	V	E	.	F	K	E	X	G	I	D	G	X	L	T	A	V	N	S	G	Q	V	D	A	A	A	N	D	I	D	V	T	K	D	R	E	.	.	.	.	.	.	.	.	E	K	F	A	F	S	T	P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D
Template Known Secondary structure													T	T	T					.						S	T	T							T	T	S	S	S				S	S		B							.	.	.	.	.	.	.	.	T	T							S											T	T
Template Predicted Secondary structure																				.																																	.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A	A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K
Query Conservation
Alig confidence						.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.																					.	.	.	.	.
Template Conservation						.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.																					.	.	.	.	.
Template Sequence		D	L	S	G	.	.	I	K	T	L	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	K	A	A	G	A	T	T	.	.	.	.	.	V	Y	X	E	V	A	R	K	Y	G	A	K	E	V	I	Y	D	N	A	T	.	.	.	.	.	N	E	Q	Y	L	K	D	V	A	N	G	R
Template Known Secondary structure		T	G	G	G	.	.		S	S	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S	.	.	.	.	.									T	T							S	S			.	.	.	.	.										T	T	S
Template Predicted Secondary structure						.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		120	.	.	.			.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.	140						.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		T	D	V	I	L	N	D	Y	Y	L	Q	T	L	A	L	A	A	F	P	D	L	N	I	T	I	H	P	D	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	X	P	N	K	Q	A	L	V	X	K	K	S	.	.	.	.	N	A	A	L	Q	K	K	X	N	E
Template Known Secondary structure																				T	T	S	S					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																				.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions