Job Description P0AFM2 Confidence 99.38% Date Thu Jan 5 11:26:43 GMT 2012 Rank 24 Aligned Residues 240 % Identity 16% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																	.																							.	.	.	.	.
Query SS confidence																		.																	.																							.	.	.	.	.
Query Sequence		K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	.	F	Q	T	L	L	V	S	R	A	L	E	K	L	G	Y	T	.	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	S	G	D	A	T	.	.	.	.	.	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G
Query Conservation																		.																	.																							.	.	.	.	.
Alig confidence																		.																	.																							.	.	.	.	.
Template Conservation
Template Sequence		E	T	A	N	I	K	L	G	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I	T	E	G	I	I	T	N	G
Template Known Secondary structure		S		S								S	S	G	G	G									T	T					T	T		T								S	S												T	T	T	T	S		S						T	T							T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.											.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.
Query Sequence		D	K	K	F	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	.	.	.	.	.	.	.	.	.	.	K	T	A	D	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H
Query Conservation																								.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	.	.	.	.	.	.	.	.	.	.	.	.	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y
Template Known Secondary structure														B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S	.	.	.	.	.	.	.	.	.	.	.	.							S	S	T	T	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.													.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		Q	L	A	A	Y	E	L	T	.	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A
Query Conservation										.
Alig confidence										.												.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		W	F	A	A	G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	.	.	.	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T			T	T	T	T	S								.	.	.										T									T	T								T	T	S											S	T	T					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		N	Y	G	F	P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	.	.	H	Q	Q	Q	F	D	G	W	V	N	E
Query Conservation																																																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	L	K	G	I	M	E	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	W	I	D	D	P	K	N	R	P	E	V	V	Q	I	V	S	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.							S	G	G	G										S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290													.	.	.	.	.	.													.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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