Job Description P0AFM2 Confidence 99.40% Date Thu Jan 5 11:26:43 GMT 2012 Rank 23 Aligned Residues 237 % Identity 19% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																										.								.																			.	.	.	.
Query SS confidence																										.								.																			.	.	.	.
Query Sequence		K	G	I	T	V	N	P	V	Q	S	T	I	T	E	E	T	F	Q	T	L	L	V	S	R	.	A	L	E	K	L	G	Y	.	T	V	N	K	P	S	E	V	D	Y	N	V	G	Y	T	S	L	A	.	.	.	.	S	G	D	A	T	F	T	A	V	N	W	T	P	L	H	D	N	M	Y	E	A	A	G	G	D
Query Conservation																										.								.																			.	.	.	.
Alig confidence																										.								.																			.	.	.	.
Template Conservation
Template Sequence		E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G
Template Known Secondary structure		S		S								S	S	G	G	G									T	T					T	T		T	T							S													G	G	G	T	S		S						T										T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		101	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure					.																							.	.	.	.	.	.	.
Query SS confidence					.																							.	.	.	.	.	.	.
Query Sequence		K	K	F	.	Y	R	E	G	V	F	V	N	G	A	A	Q	G	Y	L	I	D	K	K	T	A	D	.	.	.	.	.	.	.	Q	Y	K	I	T	N	I	A	Q	L	K	D	P	K	I	A	K	L	F	D	T	N	G	D	G	K	A	D	L	T	G	C	N	P	G	W	G	C	E	G	A	I	N	H	Q	L	A
Query Conservation					.																							.	.	.	.	.	.	.
Alig confidence					.																							.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	G	T	H	D	M	W	I	R	Y	W	L	A
Template Known Secondary structure														B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.															.	.	.	.	.	.	.	.	200	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	E	L	T	N	T	V	T	H	N	Q	G	N	Y	A	A	M	M	A	D	T	I	S	R	Y	K	E	G	K	P	V	F	Y	Y	T	W	T	P	Y	W	V	S	N	E	L	K	P	G	K	D	V	V	W	L	Q	V	P	F	S	A	L	P	G	D	K	N	A	D	T	K	L	P	N	G	A	N	Y	G	F
Query Conservation
Alig confidence																		.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	.	.	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T			B	T	T	T	B							.	.	G	G	G							T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		P	V	S	T	M	H	I	V	A	N	K	A	W	A	E	K	N	P	A	A	A	K	L	F	A	I	M	Q	L	P	V	A	D	I	N	A	Q	N	A	I	M	H	D	G	K	A	S	E	G	D	I	Q	G	H	V	D	G	W	I	K	A	.	.	H	Q	Q	Q	F	D	G	W	V
Query Conservation																																																															.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	.	.	.	.	.	.	.	.	.	.	.	.	L	M	A	V	M	E	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L
Template Known Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.								G	G	G
Template Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
							270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.													.	290	.	.	.	.													.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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