Phyre 2 alignment of P75821 with d1qyda

Job Description P75821
Confidence 99.94% Date Thu Jan 5 12:14:34 GMT 2012

Rank 65 Aligned Residues 299

% Identity 13% Template d1qyda_

SCOP info NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Tyrosine-dependent oxidoreductases

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.
Query Sequence	K	V	L	V	T	G	A	T	S	G	L	G	R	N	A	V	E	F	L	C	Q	K	G	I	S	V	R	A	T	G	R	N	E	.	.	.	.	.	.	.	.	A	M	G	K	L	L	E	K	M	G	A	E	F	V	P	A	D	L	T	E	L	V	S	S	Q	A	K	V	M	L	A	G	I	D	T	L	W	H	C
Query Conservation																																		.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.																													.	.
Template Conservation																																																																						.	.
Template Sequence	R	V	L	I	V	G	G	T	G	Y	I	G	K	R	I	V	N	A	S	I	S	L	G	H	P	T	Y	V	L	F	R	P	E	V	V	S	N	I	D	K	V	Q	M	L	L	Y	F	K	Q	L	G	A	K	L	I	E	A	S	L	D	D	H	Q	R	L	V	D	A	L	.	.	K	Q	V	D	V	V	I	S	A
Template Known Secondary structure						S	T	T	S	T	T											T	T									S			S	S													T	T	T								S	S										.	.	T	T		S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.

	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	S	F	T	S	P	W	G	T	Q	Q	A	F	D	L	A	N	V	R	A	T	R	R	L	G	E	W	A	V	A	W	G	V	R	N	F	I	H	I	S	S	P	S	L	Y	F	D	Y	H	H	H	R	D	I	K	E	D	F	R	P	H	R	F	A	N	E	F	A	R	S	K	A	A	S	E	E	V	I	N	M
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	A	G	G	V	L	S	H	H	I	L	E	.	.	.	.	.	.	.	.	Q	L	K	L	V	E	A	I	K	E	A	G	N	I	K	R	F	L	P	S	E	F	G	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	I	M	E	H	A	L	Q	P	G	S	I	T	F	I	D	K	R	K	V	R
Template Known Secondary structure				S	S	S	S	T	T	T	T	T	.	.	.	.	.	.	.	.											S				S					S			S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						S	S	T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.									.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120														.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	S	Q	A	N	P	Q	T	R	F	T	I	L	R	P	Q	S	L	F	G	P	H	D	K	V	F	I	P	R	L	A	H	M	M	H	H	Y	G	S	I	L	L	P	H	G	G	S	A	L	V	D	M	T	Y	Y	E	N	A	V	H	A	M	W	L	A	S	Q	E	A	C	D	K	L	P	S	G	R	V	Y	N
Query Conservation
Alig confidence																																																																												.	.
Template Conservation																																																																												.	.
Template Sequence	R	A	I	E	A	A	S	I	P	Y	T	Y	V	S	S	N	M	F	A	G	Y	F	A	G	S	L	A	Q	L	D	G	H	M	M	P	P	R	D	K	V	L	I	Y	G	D	G	N	V	K	G	I	W	V	D	E	D	D	V	G	T	Y	T	I	K	S	I	D	D	P	Q	T	L	N	K	T	.	.	M	Y	I
Template Known Secondary structure						T	T			B													T	T	T	S	S		T	T			S	S			S	S					B	T	T	S		S																		T	T		G	G	G	S	S	S		.	.
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220

	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence	I	T	N	G	E	H	R	T	L	R	S	I	V	Q	K	L	I	D	E	L	N	I	D	C	R	I	R	S	V	P	Y	P	M	L	D	M	I	A	R	S	M	E	R	L	G	R	K	S	A	K	E	P	P	L	T	H	Y	G	V	S	K	L	N	F	D	F	T	L	D	I	T	R	A	Q	E	E	L	.	G	Y
Query Conservation																																																																														.
Alig confidence																																																																														.
Template Conservation
Template Sequence	R	P	P	M	N	I	L	S	Q	K	E	V	I	Q	I	W	E	R	L	S	E	Q	N	L	D	K	I	Y	I	S	S	Q	D	F	L	A	D	M	K	D	K	S	Y	E	E	K	I	V	R	C	H	L	Y	Q	I	F	F	R	G	D	L	Y	N	F	E	I	G	P	N	A	I	E	A	T	K	L	Y	P	E	V
Template Known Secondary structure			G	G	G																T								B		S								T	T	S		T	T					T	T	T					T	T	S		T	T	T	S	S				S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
	221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	313	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	P	V	I	T	L	D	E	G	I	E	K	T	A
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence	K	Y	.	V	T	M	D	S	Y	L	E	R	Y	V
Template Known Secondary structure			.								T	T	T
Template Predicted Secondary structure			.
Template SS confidence
	301	.		.	.	.	.	.	.	.	310	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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