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Job DescriptionP75821
Confidence100.00%DateThu Jan 5 12:14:34 GMT 2012
Rank34Aligned Residues302
% Identity17%Templatec1n7gB_
PDB info PDB header:lyaseChain: B: PDB Molecule:gdp-d-mannose-4,6-dehydratase; PDBTitle: crystal structure of the gdp-mannose 4,6-dehydratase2 ternary complex with nadph and gdp-rhamnose.
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30........ .40.........50.........60.........70....
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Query Sequence  KVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGK. . . . . . . LLEKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCS
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Template Sequence  IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA
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Query Sequence  SFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNF. . . . . IHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEE
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Template Sequence  AQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHW
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GGGGTTS
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Query Sequence  VINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHM. . . . . MHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACD
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Template Sequence  YTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKP
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   195....200.........210.........220.........230.........240.........250.........260.........270....
 
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Query Sequence  KLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDIT
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Template Sequence  D. . . . . DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR. . . . . . . . . . . . . . . . . . . . . . . YFRPAEVDNLQGDAS
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GGGT
GG.......................GS
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B

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   275 ....280.........290.........300.........310. ........320......
 
   305....310.........320.........330.
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Query Sequence  RAQEELGYQPVITLDEGIEKTAAWLRD
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Template Sequence  KAKEVLGWKPQVGFEKLVKMMVDEDLE
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   327..330.........340.........350...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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