Job Description P42615 Confidence 25.99% Date Thu Jan 5 12:01:49 GMT 2012 Rank 12 Aligned Residues 82 % Identity 13% Template c2dnrA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 Resolution UNK

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.
Predicted Secondary structure																		.	.	.							.	.																																													.
Query SS confidence																		.	.	.							.	.																																													.
Query Sequence		R	Q	Q	E	S	T	L	A	I	R	A	V	H	Q	G	T	.	.	.	T	M	P	D	G	F	.	.	S	I	W	H	H	L	D	A	H	G	I	P	F	K	S	I	T	P	K	N	D	T	L	L	I	T	F	D	S	S	D	Q	S	A	A	A	K	A	V	L	D	R	T	L	.	P	H	G	Y	I	I	A	Q
Query Conservation																		.	.	.							.	.																																													.
Alig confidence																		.	.	.							.	.											.																																		.
Template Conservation																																							.
Template Sequence		G	S	S	G	G	T	V	L	V	S	I	K	S	S	L	P	E	N	N	F	F	D	D	A	L	I	D	E	L	L	Q	Q	F	A	S	F	G	.	E	V	I	L	I	R	F	V	E	D	K	M	W	V	T	F	L	E	G	S	S	A	L	N	V	L	S	L	N	G	K	E	L	L	N	R	T	I	T	I	A	L
Template Known Secondary structure				S	S										S	S	T	T	T		S															T	T		.									S	S	S						S	S							G	G	G	G	T	T				T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		889	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.		.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	N	N	S	Q	A	M	Q	W	L	T	R	L
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	S	P	S	G	P	S	S	G
Template Known Secondary structure		.	.	.	.	.				S	S		S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							968	.	970	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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