Job Description P77315 Confidence 3.12% Date Thu Jan 5 12:27:38 GMT 2012 Rank 52 Aligned Residues 251 % Identity 12% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																														.	.										.
Query SS confidence																																														.	.										.
Query Sequence		A	I	L	Y	L	V	F	S	L	N	A	P	G	F	I	S	L	N	N	Q	M	N	V	L	R	D	A	A	T	I	G	I	A	A	W	A	M	T	L	I	I	I	S	G	.	.	E	I	D	V	S	V	G	P	M	.	V	A	F	V	S	V	C	L	A	F	L	L	Q	F	E	V	P	L	A	V	A	C	L	L
Query Conservation																																														.	.										.
Alig confidence															.	.	.	.	.	.	.	.	.																							.	.										.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		L	L	F	F	A	G	I	F	Y	N	S	T	T	.	.	.	.	.	.	.	.	.	L	G	V	C	A	V	L	G	T	A	A	S	T	L	T	A	Q	L	L	G	V	D	K	P	L	V	R	A	G	L	F	G	F	N	G	T	L	A	G	I	A	L	P	F	F	F	N	Y	E	P	A	M	L	G	Y	V	A	L
Template Known Secondary structure															.	.	.	.	.	.	.	.	.																				T								T	T	T	T	T														B				T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		V	L	L	L	G	A	L	M	G	T	L	A	G	V	L	R	G	V	F	N	V	P	S	F	V	A	T	L	G	L	W	S	A	L	R	G	M	G	L	F	M	T	N	A	L	P	V	P	I	D	E	N	E	V	L	D	W	L	G	G	Q	F	L	G	V	P	V	S	A	L	I	M	I	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	F	T	T	I	I	M	A	S	L	L	N	F	L	G	K	W	G	V	P	A	L	T	A	P	F	V	L	A	T	W	L	L	M	F	G	V	Y	K	L	S	L	F	H	P	G	A	L	I	A	P	A	L	P	S	V	D	M	G	T	V	T	G	R	T	F	M	E	G	L	F	K	G	V	G	E	V	M
Template Known Secondary structure																		G	G	G	T				T	T												G	G	G	G	T		T	T	S		B		T	T																												G	G	G
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
										184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	L	F	A	L	F	V	F	I	S	R	K	T	A	F	G	R	S	V	F	A	V	G	G	N	A	T	A	A	Q	L	C	G	I	N	V	R	R	V	R	I	L	I	F	T	L	S	G	L	L	A	A	V	T	G	I	L	L	A	A	R	L	G	S	G	N	A	G	A	A	N	G
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		F	Q	D	N	I	V	T	G	V	I	F	V	V	A	I	L	V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	F	N	S	V	L	C	G	I	A	.	.	.	.	.	M	G	G	I	F	F	Y	L	N	I	R	T	F
Template Known Secondary structure		T																																							T	T								T	T	T	T	T										.	.	.	.	.		T	T	T	S	B			S
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	F	D	V	I	A	A	V	V	V	G	G	T	A	L	S	G	G	R	G	S	L	F	G	T	L	L	G	V	L	V	I	T	L	I	G	N	G	L	V	L	L	G	I	N	S	F	F	Q	Q	V	V	R	G	V	I	I	V	V	A	V
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	G	C	M	V	L	G	A	I	A	T	G	A	F	S	V	L	L	S	P	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W	L	F	L	F	A
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	G	G	G	T				T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.																				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions