Job Description P77315 Confidence 84.99% Date Thu Jan 5 12:27:38 GMT 2012 Rank 3 Aligned Residues 204 % Identity 11% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		G	K	S	V	S	L	K	Q	F	V	S	R	H	I	N	E	I	G	L	L	V	V	I	A	I	L	Y	L	V	F	S	L	N	A	P	G	F	I	S	L	N	N	Q	M	N	V	L	R	D	A	A	T	I	G	I	A	A	W	A	M	T	L	I	I	.	.	.	I	S	G	E	I	D	V	S	V	G	P	M	V
Query Conservation																																																																		.	.	.
Alig confidence																																																																		.	.	.
Template Conservation
Template Sequence		K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G
Template Known Secondary structure				T	T	T	T	T	S					S																						G	G	G	S	S	S	S																													S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	S	V	C	L	A	F	L	L	Q	F	E	V	P	L	A	V	A	C	L	L	V	L	L	L	G	A	L	M	G	T	L	A	G	V	L	R	G	V	F	N	V	P	S	F	V	A	T	L	G	L	W	S	A	L	R	G	M	G	L	F	M	T	N	A	L	P	V	P	I	D	E	N	E	V	L	D	W
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	.	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L
Template Known Secondary structure										T	T	T	T	T	T																								.				T	T				T	T																											S				G	G
Template Predicted Secondary structure																																							.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
								168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	G	G	Q	F	L	G	V	P	V	S	A	L	I	M	I	V	L	F	A	L	F	V	F	I	S	R	K	T	A	F	G	R	S	V	F	A	V	G	G	N	A	T	A	A	Q	L	C	G	I	N	V	R	R	V
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																															.	.	.												.	.	.	.
Template Conservation																																						.	.	.												.	.	.	.
Template Sequence		F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V	.	.	.	.	G	L	D	L	S	Q	H
Template Known Secondary structure		G	T																																		T	.	.	.		S	B									.	.	.	.
Template Predicted Secondary structure																																						.	.	.												.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions