|   |
143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | T | K | R | L | L | R | D | A | G | L | N | I | A | P | F | I | T | L | T | R | A | N | R | H | N | I | S | F | A | E | V | E | S | K | L | G | L | P | L | F | V | K | P | A | N | Q | G | S | S | V | G | V | S | K | V | T | S | E | E | Q | Y | A | I | A | V | D | L | A | F | E | F | D | H | K | V | I | V | E | Q |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |
|
|   |
|
|
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|   |   |   |
|
|   |   |
|
|
|
|   |
|   |
|   |   |
|   | . | . | . | . | . | . | . |
|
|   |
|   |   |   |   |
|
|
|
Template Sequence |   |
L | Q | D | K | A | L | E | G | A | G | I | P | R | V | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | V | E | P | E | D | A | K | P | D | E | L | Y | F | V | R | I | E | G | S | E | L | . |
. |
. |
. |
. |
. |
. |
E | E | R | L | S | P | Y | R | V | E | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|
| B |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | B |
|
| S |
|
|
|
| S | S |
|
|  |  |  |  |
|
|
|  |  |
| . | . | . | . | . | . | . | S |
|
|
|
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 140 | . | . | . | . | . | . | . | . |
  |
  |   |
223 | . | . | . | . | . | . | 230 | . | . | . | . | . | |
|
|
. | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | |
|
|
|
|
|
Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
Query Sequence |   |
G | I | K | G | R | E | I | E | C | A | V | L | G | . |
. |
. |
N | D | N | P | Q | A | S | T | C | G | E | I | V | L | T | S | D | F | Y | A | Y | D | T | K | Y | I | D | E | D | G | A | K | V | V | V | P | A | A | I | A | P | E | I | N | D | K | I | R | A | I | A | V | Q | A | Y | Q | T | L | . |
. |
. |
. |
. |
. |
Query Conservation |   |
  |
|   |
|   |
|   |   |
|   |
|   |   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
| . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
Template Conservation |   |
|
|   |
|   |   |   |
|   |   |
|
|
|
|
|
|   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |
|   |
|
|
|
|   |
|   |   |
|
|
|
|
|
|   |   |
|   |   |   |
|
|   |
|
|   |
|
|   |   |
|   |
|
|
Template Sequence |   |
F | I | P | G | V | Y | L | Y | V | H | F | F | Y | S | P | I | L | E | R | L | E | L | L | G | V | D | E | R | V | L | I | A | D | G | N | A | R | W | P | V | K | P | L | P | Y | T | I | V | G | N | R | A | I | A | L | R | E | S | L | L | P | Q | L | Y | D | Y | G | L | A | F | V | R | T | X | R | E | L | E | P | P |
Template Known Secondary structure |   |
|
|
| S |
|  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S | S | S | S |
|
| S |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . |
  |
  |   |
294 | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | |
. | 320 | . | . | . | . | . | |
. | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
| . |
|
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | C | A | G | M | A | R | V | D | V | F | L | T | P | E | N | E | V | V | I | N | E | I | N | T | . |
L | P | G | F | T | N | I | . |
S | M | Y | P | K | L | W | Q | A | S | G | L | G | Y | T | D | L | I | T | R | L | I | E | L | A | L |
Query Conservation |   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|   | . |   |
|
|   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|   |   |   |
|   |   | . | . |
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|
|
|   |
|   |   |   |
|   |
|
|   |
|
|
|
|
|   |
|
|
|   |
|   |
Template Sequence |   |
G | V | I | G | P | F | A | L | H | F | A | Y | D | G | S | . |
. |
F | K | A | I | G | I | A | S | R | I | D | G | G | S | N | A | D | H | W | Y | S | E | L | Y | W | G | E | R | L | S | X | G | R | R | I | A | R | E | L | R | L | A | E |
Template Known Secondary structure |   |
|
|
| S |  |  |  |  |  |  |  |
| S | S | S | . | . |
|  |  |  |  |  |  | S | S |
|
| S | G | G | G | S |
|
|
|
|  |  |  |  | S | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
245 | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
|
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . |
  |