Job Description P0A6J8 Confidence 100.00% Date Thu Jan 5 11:03:18 GMT 2012 Rank 13 Aligned Residues 298 % Identity 31% Template c3r23B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	S	R	F	D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G	K	H
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	R	I	G	V	I	X	G	G	V	S	S	E	K	Q	V	S	I	X	T	G	N	E	X	I	A	N	L	D	K	N	K	Y	E	I	V	P	I	T	L	N	E	K	X	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S																		S		T	T	T									S	S	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Q	L	I	D	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	I	E	K	A	K	D	I	D	F	A	L	L	A	L	H	G	K	Y	G	E	D	G	T	V	Q	G	T	L	E	S	L	G	I	P	Y	S	G	S	N	X	L	S	S	G	I	C	X	D	K	N	I	S	K	K	I	L	R	Y	E	G	I	E	T	P	D	W	I	E	L	T	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				G	G	G		S								S					S	S									T	T			B	S	S	S																					T	T											S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S	T
Query Conservation
Alig confidence										.	.	.																						.	.	.	.
Template Conservation										.	.	.																						.	.	.	.
Template Sequence		X	E	D	L	N	F	D	E	.	.	.	L	D	K	L	G	F	P	L	V	V	K	P	N	S	G	G	V	K	I	V	Y	.	.	.	.	D	K	D	E	L	I	S	X	L	E	T	V	F	E	W	D	S	E	V	V	I	E	K	Y	I	K	G	E	E	I	T	C	S	I	F	D	G	K	Q	L	P	I	I	S
Template Known Secondary structure		S	S							.	.	.		T	T	T		S	S						S									.	.	.	.	S	T	T														S										S									T	T
Template Predicted Secondary structure										.	.	.																						.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I	N	T	L	P	G	F	T
Query Conservation
Alig confidence					.	.	.															.	.																																										.
Template Conservation					.	.	.															.	.																																										.
Template Sequence		I	R	H	.	.	.	A	A	E	F	F	D	Y	N	A	K	Y	D	D	A	.	.	S	T	I	E	E	V	I	E	L	P	A	E	L	K	E	R	V	N	K	A	S	L	A	C	Y	K	A	L	K	C	S	V	Y	A	R	V	D	X	X	V	K	.	D	G	I	P	Y	V	X	E	V	N	T	L	P	G	X	T
Template Known Secondary structure					.	.	.						T	T	T	T				S		.	.																												T	T			S										.	T	T									S	S				S
Template Predicted Secondary structure					.	.	.															.	.																																										.
Template SS confidence
		195	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L	I	E	L	A	L	E	R	H	A	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	S	L	L	P	K	S	A	D	A	A	G	I	H	Y	S	K	L	L	D	X	I	I	E	T	S	L	R	V	R	K	E	E
Template Known Secondary structure		T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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