Job Description P0A6J8 Confidence 100.00% Date Thu Jan 5 11:03:18 GMT 2012 Rank 32 Aligned Residues 298 % Identity 16% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	S	R	.	.	F	D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G
Query Conservation																																		.	.
Alig confidence											.	.	.	.	.	.	.	.	.															.	.											.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.																											.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	V	L	V	V	G	N	G	.	.	.	.	.	.	.	.	.	G	R	E	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	G	N	A	.	.	.	G	I	W	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.											T	T	S	T	T		S						S			T	.	.	.	T	G	G	G	T	S					S		T	T									.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.																											.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.										10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	E	H	Q	L	I	D	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	K	N	E	G	V	D	F	T	I	V	G	P	E	A	.	.	P	L	V	E	G	I	V	D	E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.					T		S						S	S		.	.				T	T								T	T					S			T	T	T	T																	T			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
														58	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		T	R	A	N	R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	.	.	.	.	.	.	H	K	V	I	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G
Query Conservation																																																								.	.	.	.	.	.
Alig confidence							.	.	.	.																																														.	.	.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		T	D	F	E	K	.	.	.	.	A	K	E	Y	V	E	K	V	G	A	P	I	V	V	K	A	D	G	L	A	A	G	K	G	A	V	V	C	E	T	V	E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	E	G	E	E	A	S	Y	I	V	M	I
Template Known Secondary structure		S					.	.	.	.						T	T	T		S	S						S	S		S	T	T								S													T	S			S	T	T	T	S	S	S
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		124	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.						.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.																					.	.
Query SS confidence																																									.	.	.	.	.																					.	.
Query Sequence		N	D	N	P	Q	A	S	T	C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	.	.	.	.	.	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	.	.	C	A	G	M	A	R	V	D	V	F	L	T	P	E
Query Conservation																																									.	.	.	.	.																					.	.
Alig confidence																				.	.																				.	.	.	.	.																					.	.
Template Conservation																				.	.
Template Sequence		N	G	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R	L	L	.	.	D	E	D	K	G	P	N	T	G	G	M	G	A	Y	S	P	T	P	V	I	N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E
Template Known Secondary structure			T	T								B								.	.	T	T	T						S		S					S		T	T	S												T											T	T															T	T
Template Predicted Secondary structure																				.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	V	V	I	N	E	I	N	T	L	P	G	F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L	I	E	L	A	L
Query Conservation
Alig confidence			.												.	.	.																			.	.	.
Template Conservation			.												.	.	.																			.	.	.
Template Sequence		G	.	P	K	V	L	E	F	N	V	R	L	G	.	.	.	D	P	E	A	Q	P	I	L	M	R	V	K	N	D	F	L	E	T	.	.	.	L	L	N	F	Y	E
Template Known Secondary structure			.								S	S			.	.	.	T	T	T							T	B		S						.	.	.
Template Predicted Secondary structure			.												.	.	.																			.	.	.
Template SS confidence
		278		.	280	.	.	.	.	.	.	.	.	.				290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions