Job Description P0A6J8 Confidence 100.00% Date Thu Jan 5 11:03:18 GMT 2012 Rank 12 Aligned Residues 310 % Identity 26% Template c2pvpB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	S	R	F	D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G	K
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		H	M	E	F	C	V	L	F	G	G	A	S	F	E	H	E	I	S	I	V	S	A	I	A	L	K	G	V	L	K	D	R	I	K	Y	F	I	F	L	D	E	N	H	H	F	Y	L	I	E	E	S	N	M	H	S	K	Y	F	A	Q	I	K	E	K	K	L	P	P	.	.	.	.	.	.	.	.	L	I	L	T
Template Known Secondary structure												S	S	T	T																G	G	G									T	T								G	G	G		S						T	G	G	G	G					.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	H	Q	L	I	D	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	N	G	L	L	K	N	S	F	L	G	A	K	I	I	E	L	P	L	V	I	N	L	V	H	G	G	D	G	E	D	G	K	L	A	S	L	L	E	F	Y	R	I	A	F	I	G	P	R	I	E	A	S	V	L	S	Y	N	K	Y	L	T	K	L	Y	A	K	D	L	G	I	K	T	L	D	Y	V	L	L	N
Template Known Secondary structure		T	T							T	T									S							S					S	S									T	T					S											S											T	T		B
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		R	A	N	R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	G	.	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A
Query Conservation																																																																		.
Alig confidence						.	.	.																																																										.
Template Conservation						.	.	.
Template Sequence		E	K	N	R	.	.	.	A	N	A	L	D	L	M	N	F	N	F	P	F	I	V	K	P	S	N	A	G	S	S	L	G	V	N	V	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	E	Y	S	K	E	V	L	I	E	P	F	I	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	K	D	F	C
Template Known Secondary structure		T	T	T		.	.	.					T	T					S							S	S		S	T	T	T	T						S	T												T	T		S									T	T												T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		152	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I	N	T	L	P	G
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Sequence		F	S	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	P	N	K	Q	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	N	F	K	K	L	Y	S	D	L	F	D	G	A	I	I	R	C	D	F	F	V	I	.	E	N	E	V	Y	L	N	E	I	N	P	I	P	G
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		T	T																								T	T	T	T	T	T											.	T	T									S	S		G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template SS confidence
		229	230	.	.																			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L
Query Conservation
Alig confidence												.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		S	L	A	N	Y	L	F	D	D	F	.	.	.	.	K	T	T	L	E	N	L	A	Q	S	L
Template Known Secondary structure		G	G	G	G	G	G	S	T	T		.	.	.	.											S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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