Job Description P0A6J8 Confidence 99.08% Date Thu Jan 5 11:03:18 GMT 2012 Rank 80 Aligned Residues 271 % Identity 18% Template c2pbzC_ PDB info PDB header:ligase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis Resolution 2.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	S	R	F	D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G	K	H	E	H
Query Conservation
Alig confidence						.	.			.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.			.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	T	I	.	.	A	S	.	.	.	.	.	.	.	.	H	S	S	L	Q	I	L	L	G	A	K	K	E	G	F	K	T	R	L	Y	V	S	P	K	R	R	P	F	Y	S	S	L	P	I	V	D	D	L	V	V	A	E	E	X	T	S	I	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						.	.	S	S	.	.	.	.	.	.	.	.	T	T											T	T									T	T	T						T		T	T		S						S		S			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.			.	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.			.	10									.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	I	D	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R	A	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.																									.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.																									.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	G	I	V	V	P	H	G	S	F	V	A	Y	L	G	I	E	A	I	.	E	K	A	K	A	R	F	F	G	N	R	R	.	F	L	K	W	E	T	T	F	E	L	Q	D	K	A	L	E	G	A	G	I	P	R	V	E	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	B				B	T	T					S						.		T			S			B	S		S	S	.	G	G	G	G	G	S												T	T			B			.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.													.																									.	.	.	.	.	.	.	.
Template SS confidence
																60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	.	.	.	N	D	N	P	Q	A	S
Query Conservation																																																																								.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																									.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	P	E	D	A	K	P	D	E	L	Y	F	V	R	I	E	G	S	E	L	.	.	.	.	.	.	.	E	E	R	L	S	P	Y	R	V	E	R	F	I	P	G	V	Y	L	Y	V	H	F	F	Y	S	P	I	L	E	R	L	E	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			S					S	S													.	.	.	.	.	.	.	S														S											T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template SS confidence
																			116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.								.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		T	C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	.	.	.	.	.	.	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.																.	.
Template Conservation																																																																										.	.
Template Sequence		G	V	D	E	R	V	L	I	A	D	G	N	A	R	W	P	V	K	P	L	P	Y	T	I	V	G	N	R	A	I	A	L	R	E	S	L	L	P	Q	L	Y	D	Y	G	L	A	F	V	R	T	X	R	E	L	E	P	P	G	V	I	G	P	F	A	L	H	F	A	Y	D	G	S	.	.	F	K	A	I	G	I
Template Known Secondary structure									T	T		S	S	S	S	S			S																G	G	G																			S	T	T				S									S	S	S	.	.
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.
		317	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		N	T	L	P	G	F	T	N	I	.	.	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L	I	E	L	A	L
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		A	S	R	I	D	G	G	S	N	A	D	H	W	Y	S	E	L	Y	W	G	E	R	L	S	X	G	R	R	I	A	R	E	L	R	L	A	E
Template Known Secondary structure			S	S	B		S	G	G	G	S				S					S	S	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions