Job Description P0A6J8 Confidence 99.94% Date Thu Jan 5 11:03:18 GMT 2012 Rank 59 Aligned Residues 230 % Identity 14% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	.	.	.	.	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R	A	N	R	H	N	I	S	F	A	E
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.															.
Template Conservation																																					.
Template Sequence		K	P	D	F	I	L	V	R	Q	H	A	Y	S	M	A	L	G	E	D	Y	R	S	L	V	I	G	L	Q	Y	G	G	L	P	A	V	.	N	S	L	Y	S	V	Y	N	F	C	S	K	P	W	V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P
Template Known Secondary structure				S						S		S			G	G	G	T													T	T					.	S								T	T																		T	T	T	S		B							S	S	S	T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	G	.	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S	T	C	G	E	I	V	L	T	S	D
Query Conservation																																																							.
Alig confidence																																																							.									.	.	.
Template Conservation																																																																.	.	.
Template Sequence		M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G	K	I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	K	T	Y	A	T	T	E	A	F	I	D	S	K	Y	D	I	R	I	Q	K	I	.	.	.	G	S	N	Y	K	A	Y	M	R	T	S	I	S	G	N
Template Known Secondary structure						S	S	S	S						S	S			T	T	T	T						S															T																					.	.	.	T	T										S	S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I	N	.	.	T	L	P	G	F	T	N	I	S	M	Y	P	K
Query Conservation																																																																			.	.
Alig confidence			.	.	.	.	.	.	.																.	.	.	.																																							.	.									.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.																.	.	.	.																																																	.	.	.	.	.
Template Sequence		W	.	.	.	.	.	.	.	K	A	N	T	G	S	A	M	L	E	Q	V	A	M	T	.	.	.	.	E	R	Y	R	L	W	V	D	S	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	S	K	D	G	R	D	Y	I	I	E	V	M	D	S	S	M	P	L	I	G	E	H	.	.	.	.	.
Template Known Secondary structure		S	.	.	.	.	.	.	.	S	T	T	S	S	S										.	.	.	.											T	T	G	G	G			S										T	T	S										T	T					G	G	G	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.																.	.	.	.																																																	.	.	.	.	.
Template SS confidence
		314								.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L	I	E	L	A	L	E
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	V	E	E	D	R	Q	L	M	A	D	L	V	V	S	K	M	S
Template Known Secondary structure		.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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