Phyre 2 alignment of P0A6J8 with c1vkzA

Job Description P0A6J8
Confidence 100.00% Date Thu Jan 5 11:03:18 GMT 2012

Rank 34 Aligned Residues 283

% Identity 16% Template c1vkzA_

PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	V	G	I	V	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	K	N	I	V	D	A	I	D	K	S	R	F	D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G	K	H
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	R	V	H	I	L	G	S	G	.	.	.	.	.	.	.	.	.	G	R	E	H	A	I	G	W	A	F	A	K	Q	G	Y	E	V	H	F	Y	P	G	N	A	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	D	G	T	N	H	P	Y	E	G	E	K	T	L	K	A	I	P	E
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.													T	T										T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	S							T						T	S		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	4	.	.	.	.	.	10	.	.										.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.																	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	H	Q	L	I	D	A	Q	N	G	Q	P	L	P	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	D	I	V	I	P	G	S	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	V	E	R	S	N	V	F	G	P	V	K	E	V	A	R	L	E	G	S	K	V	Y	A	K	R	F	X	K	K	Y	G	I	R	T	A	R	F	E	V	A	E	T
Template Known Secondary structure	S						S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T				T	T	B	S	S																						T	T										S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	59	60	.	.	.	.	.	.	.	.																											.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence	A	N	R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	.	.	.	.	.	.	D	H	K	V	I	V	E	Q	G	I	K	G	R	E	I	E	C	A	V	L	G	N	D
Query Conservation																																																				.	.	.	.	.	.
Alig confidence				.	.	.	.																																													.	.	.	.	.	.
Template Conservation				.	.	.	.
Template Sequence	P	E	E	.	.	.	.	L	R	E	K	I	K	K	F	S	P	P	Y	V	I	K	A	D	G	L	A	R	G	K	G	V	L	I	L	D	S	K	E	E	T	I	E	K	G	S	K	L	I	I	G	E	L	I	K	G	V	K	G	P	V	V	I	D	E	F	L	A	G	N	E	L	S	A	X	A	V	V	N	G
Template Known Secondary structure				.	.	.	.						T	T	S		S	S						S	S			S	S							S	S														T	S	S	S	T	T			S										S											T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
	118	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.						.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence	N	P	Q	A	S	T	C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	.	.	.	.	.	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V
Query Conservation																																																										.	.	.	.	.
Alig confidence																	.	.																																								.	.	.	.	.																.
Template Conservation																	.	.																																																												.
Template Sequence	R	N	F	V	I	L	P	F	V	R	D	Y	K	R	L	X	.	.	D	G	D	R	G	P	N	T	G	G	X	G	S	W	G	P	V	E	I	P	S	D	T	I	K	K	I	E	E	L	F	D	K	T	L	W	G	V	E	K	E	G	Y	A	Y	R	G	F	L	Y	L	G	L	X	L	H	D	G	D	.	P	Y
Template Known Secondary structure	T																.	.	T	T	T						S		S																														T	T															T	T		.
Template Predicted Secondary structure																	.	.																																																												.
Template SS confidence
	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270

	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	N	E	I	N	T	L	P	G	F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L	I
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence	I	L	E	Y	N	V	R	L	G	.	.	.	D	P	E	T	E	V	I	V	T	L	N	P	E	G	F	V	N	A	V	L	E	G	Y
Template Known Secondary structure						S	S			.	.	.	T	T
Template Predicted Secondary structure										.	.	.
Template SS confidence
	271	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions