Job Description P0A6J8 Confidence 99.94% Date Thu Jan 5 11:03:18 GMT 2012 Rank 61 Aligned Residues 231 % Identity 12% Template c1pk8D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp Resolution 2.10 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		V	I	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	M	.	.	.	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R	A	N	R	H	N	I	S	F	A	E	V	E	S	K
Query Conservation																					.	.	.
Alig confidence																					.	.	.												.
Template Conservation																																			.
Template Sequence		V	L	I	R	Q	H	A	F	S	M	A	R	N	G	D	Y	R	S	L	V	I	G	L	Q	Y	A	G	I	P	S	V	N	S	.	L	H	S	V	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	R	L	H	K	K	L	G	T	E	E	F	P	L	I	D	Q	T	F	Y	P	N	H	K	E	M	L	S	S
Template Known Secondary structure						S		S			S	S	T	T													T	T					S		.							T	S	S																	T	T	T			B							S	S	G	G	G
Template Predicted Secondary structure																																			.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	.	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S	T	C	G	E	I	V	L	T	S	D	F	Y	A	Y
Query Conservation																																																		.
Alig confidence																																																		.										.	.	.																	.	.	.
Template Conservation																																																												.	.	.																	.	.	.
Template Sequence		T	T	Y	P	V	V	V	K	M	G	H	A	H	S	G	M	G	K	V	K	V	D	N	Q	H	D	F	Q	D	I	A	S	V	V	A	L	T	K	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	V	R	V	Q	K	I	.	.	.	G	Q	N	Y	K	A	Y	M	R	T	S	V	S	G	N	W	.	.	.
Template Known Secondary structure		S	S	S	S						S	S			T	T	T	T						S															T	S																				.	.	.	T	T										S	S	S		S	.	.	.
Template Predicted Secondary structure																																																												.	.	.																	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	K	Y	I	D	E	D	G	A	K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I	N	T	L	P	G	F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G
Query Conservation
Alig confidence		.	.																.	.	.	.	.	.																																										.	.	.	.
Template Conservation		.	.																.	.	.	.	.	.																																										.	.	.	.
Template Sequence		.	.	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	T	C	S	E	I	F	G	G	L	D	I	C	A	V	E	A	L	H	G	K	D	G	R	D	H	I	I	E	V	V	G	S	S	.	.	.	.	M	P	L	I	G	D	H	Q	D	E	D	K
Template Known Secondary structure		.	.	S	T	T	S	S	S										.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T	.	.	.	.					S	T	T
Template Predicted Secondary structure		.	.																.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
				336	.	.	.	340	.	.	.	.	.	.	.	.	.	350							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.	.	.	.	.	.	.	.	400	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Y	T	D	L	I	T	R	L	I	E	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	I	V	E	L	V	V	N	K	M	T	Q	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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