Job Description P0A6J8 Confidence 99.94% Date Thu Jan 5 11:03:18 GMT 2012 Rank 56 Aligned Residues 295 % Identity 13% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		D	V	V	L	L	G	I	D	K	Q	G	Q	W	H	V	S	D	A	S	N	Y	L	L	N	A	D	D	P	A	H	I	A	L	R	P	S	A	T	S	L	A	Q	V	P	G	K	H	E	H	Q	L	I	D	A	Q	N	G	Q	P	L	P	.	.	.	.	T	V	D	V	I	F	P	I	V	H	G	T	L	G	E
Query Conservation																																																															.	.	.	.
Alig confidence																																																															.	.	.	.							.
Template Conservation																																																																									.
Template Sequence		K	V	L	L	V	V	D	E	P	H	T	D	W	A	K	C	F	R	G	K	K	I	L	G	D	Y	D	I	K	V	E	Q	A	E	F	S	E	L	N	L	V	A	H	A	D	G	T	Y	A	V	D	M	Q	V	L	R	N	G	T	K	V	V	R	S	F	R	P	D	F	V	L	.	I	R	Q	H	A	F	G	M
Template Known Secondary structure										T	T	S							T	T				T	T	T										G	G	G							T	T	S										S	S	S	S	S								S				.			S					S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.
		113	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		D	G	S	.	.	.	.	.	L	Q	G	M	L	R	V	A	N	L	P	F	V	G	S	D	V	L	A	S	A	A	C	M	D	K	D	V	T	K	R	L	L	R	D	A	G	L	N	I	A	P	F	I	T	L	T	R	A	N	R	H	N	I	S	F	A	E	V	E	S	K	L	G	L	P	L	F	V	K	P	A
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.														.
Template Conservation																							.
Template Sequence		A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	.	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E	M	L	T	L	P	T	F	P	V	V	V	K	I	G
Template Known Secondary structure		S	T	T													T	T					.	S								T	S	S																	T	T	T	S		B							S	S	G	G	G	G	S	S				S	S						S
Template Predicted Secondary structure																							.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		N	Q	G	S	S	V	G	V	S	K	V	T	S	E	E	Q	Y	A	I	A	V	D	L	A	F	E	F	D	H	K	V	I	V	E	Q	G	I	K	.	G	R	E	I	E	C	A	V	L	G	N	D	N	P	Q	A	S	T	C	G	E	I	V	L	T	S	D	F	Y	A	Y	D	T	K	Y	I	D	E	D	G	A
Query Conservation																																								.
Alig confidence																																								.										.	.	.																	.	.	.	.	.
Template Conservation																																																		.	.	.																	.	.	.	.	.
Template Sequence		H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	Q	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	.	.	.	G	N	N	Y	K	A	Y	M	R	T	S	I	S	G	N	W	.	.	.	.	.	K	T	N	T	G	S	A	M
Template Known Secondary structure		S		S	T	T	T	T						S															T																					.	.	.	T	T									S	S		T	T	T	.	.	.	.	.	S		S				S	S
Template Predicted Secondary structure																																																		.	.	.																	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	V	P	A	A	I	A	P	E	I	N	D	K	I	R	A	I	A	V	Q	A	Y	Q	T	L	G	C	A	G	M	A	R	V	D	V	F	L	T	P	E	N	E	V	V	I	N	E	I	N	T	L	P	G	F	T	N	I	S	M	Y	P	K	L	W	Q	A	S	G	L	G	Y	T	D	L	I	T	R	L
Query Conservation
Alig confidence									.	.	.	.	.	.																																										.	.	.	.
Template Conservation									.	.	.	.	.	.																																										.	.	.	.
Template Sequence		L	E	Q	I	A	M	S	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	.	.	.	.	M	P	L	I	G	E	H	Q	V	E	D	R	Q	L	I	T	D	L	V	I	S	K
Template Known Secondary structure									.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T	.	.	.	.					S	S
Template Predicted Secondary structure									.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		345	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.					.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		347	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	L	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	Q	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions