Job Description Q47688 Confidence 98.63% Date Thu Jan 5 12:37:02 GMT 2012 Rank 10 Aligned Residues 222 % Identity 15% Template d1xr6a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases RNA-dependent RNA-polymerase Resolution 2.50

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H
Query Conservation
Alig confidence																																	.																									.	.	.	.	.	.
Template Conservation																																	.																									.	.	.	.	.	.
Template Sequence		G	K	T	R	V	I	E	A	S	S	I	N	D	T	I	L	F	R	T	T	F	G	N	L	F	S	K	F	H	L	N	.	P	G	V	V	T	G	S	A	V	G	C	D	P	E	T	F	W	S	K	I	P	V	M	L	.	.	.	.	.	.	D	G	D	C	I	M	A	F	D	Y	T	N	Y	D	G	S	I	H
Template Known Secondary structure		T																															.	T	B	T	T	T	T	B		T	T														S	.	.	.	.	.	.		S	S								S	S	T	G	G	G
Template Predicted Secondary structure																																	.																									.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		P	V	W	F	Q	A	L	K	K	V	L	E	N	L	S	F	Q	S	N	L	I	D	R	L	C	Y	S	K	H	L	F	K	S	T	Y	Y	E	V	A	G	G	V	P	S	G	C	S	G	T	S	I	F	N	T	M	I	N	N	I	I	I	R	T	L	V	L	D	A	Y	K	N	I	D	L	D	.	.	.	.	.
Template Known Secondary structure															T	T				G	G	G											T	T							S	S			S	S		T	T																						S	S			G	G	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.
Predicted Secondary structure																																																															.													.	.
Query SS confidence																																																															.													.	.
Query Sequence		N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	.	N	M	D	K	T	K	I	P	H	V	N	D	.	.	G	F	I	F
Query Conservation																																																															.													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.						.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	K	I	I	A	Y	G	D	D	V	I	F	S	Y	K	Y	T	.	.	.	.	.	L	D	M	E	A	I	A	N	E	G	K	K	.	Y	G	L	T	I	T	P	A	D	K	S	T	E	F	K	K	L	D	Y	N	N	V	T	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G							T	T							S	S		.	.	.	.	.									T	T	G	G	.	G	T						S	T	T		S	S				B		T	T	T			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.
Template SS confidence
																						319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.						.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	H	R	L	I	R	K	R	S	R	Y	G	E	M	R	V	V	S	T	I	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	R	G	F	K	Q	D	E	K	H	T	F	L	I	H	P	T	F	P	V	E	E
Template Known Secondary structure		T	T	B						S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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