Job Description Q47688 Confidence 98.71% Date Thu Jan 5 12:37:02 GMT 2012 Rank 7 Aligned Residues 209 % Identity 16% Template d1u09a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases RNA-dependent RNA-polymerase Resolution 1.91

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H
Query Conservation
Alig confidence																																.																											.	.	.	.	.
Template Conservation																																.																											.	.	.	.	.
Template Sequence		G	K	T	R	I	V	D	V	L	P	V	E	H	I	L	Y	T	R	M	M	I	G	R	F	C	A	Q	M	H	S	.	N	N	G	P	Q	I	G	S	A	V	G	C	N	P	D	V	D	W	Q	R	F	G	T	H	F	A	.	.	.	.	.	Q	Y	R	N	V	W	D	V	D	Y	S	A	F	D	A	N	H	C
Template Known Secondary structure		T																														.	T		B	G	G	G	T	B		T	T															T	.	.	.	.	.	T	S	S								S	S	T	T	T	T
Template Predicted Secondary structure																																.																											.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		H	R	L	L	M	K	A	V	R	R	R	I	S	.	.	.	.	.	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																																																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		S	D	A	M	N	I	M	F	E	E	V	F	R	T	E	F	G	F	H	P	N	A	E	W	I	L	K	T	L	V	N	T	E	H	A	Y	E	N	K	R	I	T	V	E	G	G	M	P	S	G	C	S	A	T	S	I	I	N	T	I	L	N	N	I	Y	V	L	Y	A	L	R	R	H	Y	E	G	V	.	.	.
Template Known Secondary structure													S		G	G	G	T											T	T	T															S	S			T	T		T	T																					S	S	S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.						.	.	.	.	320
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	D	K	.	.	.	.	.	T	K	I	P	H
Query Conservation																																																																								.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	D	T	Y	T	M	I	S	Y	G	D	D	I	V	V	A	S	D	Y	D	.	.	.	.	.	L	D	F	E	A	L	K	P	H	F	K	S	.	L	G	Q	T	I	T	P	A	D	K	S	D	K	G	F	V	L	G	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G							T	T							S	S		.	.	.	.	.												T	.	T	T						S			S	S	S	S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.
Template SS confidence
																								327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.						.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	D	G	F	I	F	L	G	H	R	L	I	R	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	T	D	V	T	F	L	K	R	H	F	H	M	D	Y
Template Known Secondary structure			G	G	G				T	T							T
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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