Job Description Q47688 Confidence 97.30% Date Thu Jan 5 12:37:02 GMT 2012 Rank 21 Aligned Residues 200 % Identity 19% Template d1rw3a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase Resolution 3.00

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																										.	.	.	.										.
Query SS confidence																										.	.	.	.										.
Query Sequence		A	R	L	A	V	E	L	Q	I	L	R	D	E	L	L	S	G	H	Y	Q	P	L	P	A	.	.	.	.	R	R	V	Y	I	P	K	S	N	.	G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E
Query Conservation																										.	.	.	.										.
Alig confidence																										.	.	.	.										.										.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	R	L	G	I	K	P	H	I	Q	R	L	L	D	Q	G	I	L	V	P	C	Q	S	P	W	N	T	P	L	L	P	V	K	K	P	G	T	N	D	Y	R	P	V	Q	D	L	.	.	.	.	.	.	.	.	R	E	V	N	K	R	V	E	D	I	H	P	T	V	P	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T					S										T	T	S							S		B	B								S	S	S	S								T	.	.	.	.	.	.	.	.						T	B										.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	Y	N	L	L	S	G	L	P	P	S	H	Q	W	Y	T	V	L	D	L	K	D	A	F	F	C	L	R	L	H	.	.	.	.	.	.	.	.	.	P	T	S	Q	P	L	F	A	.	.	.	.	F	E	W	R	D	P	E	M	G	I	S	G	Q	L	T	W	T	R	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.						T	T			T	T									B	T	T	G	G	G	G	S	B	B		.	.	.	.	.	.	.	.	.	S	T	T	S	G	G	G		.	.	.	.					T	T	S	S	S								S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
												132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		P	Q	G	F	K	N	S	P	T	L	F	D	E	A	L	H	R	D	L	A	D	F	R	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	D	L	I	L	L	Q	Y	V	D	D	L	L	L	A	A	T	S	.	E	L	D	C
Template Known Secondary structure			S	S		T	T																			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							T	T							S	S	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																																.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	D	K	T	K	I	P	H	V	N	D	G	F	I	F	L	G	H	R	L
Query Conservation
Alig confidence																.												.	.
Template Conservation																.												.	.
Template Sequence		Q	Q	G	T	R	A	L	L	Q	T	L	G	N	L	.	G	Y	R	A	S	A	K	K	A	Q	I	.	.	C	Q	K	Q	V	K	Y	L	G	Y	L	L
Template Known Secondary structure																.	T			B		G	G	G				.	.	S	B	S	S				T	T
Template Predicted Secondary structure																.												.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions