Return to main results Retrieve Phyre Job Id

Job DescriptionQ47688
Confidence98.51%DateThu Jan 5 12:37:02 GMT 2012
Rank11Aligned Residues217
% Identity13%Templated1ra6a_
SCOP infoDNA/RNA polymerases DNA/RNA polymerases RNA-dependent RNA-polymerase
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110.........120.........130.........140.........150.........160.........170
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  GKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVH
Query Conservation     
 
 
    




  
   
    
  
   
 


 

    

  
   
          

  

   



 
Alig confidence 






























..






















.......
















Template Conservation 



 
   
    
  
  
  
       ..        
 

   
  
   
.......       


 

 

 
Template Sequence  GKSRLIEASSLNDSVAMRMAFGNLYAAFHKN. . PGVITGSAVGDPDLFWSKIPVLM. . . . . . . EEKLFAFDYTGYDASLS
Template Known Secondary structure  T





..TBTTTTB



TTTS.......
S

SS

Template Predicted Secondary structure 




..










.......













Template SS confidence 















































































   171........180.........190.........200. ........210.........220.... .....230.........240.
 
   171.. ......180.........190.........200.........210.........220.........230.........240.......
Predicted Secondary structure  ...































Query SS confidence 


. . .









































































Query Sequence  HRL. . . LMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDR
Query Conservation 
  ...
   
         
 

   
               




  




 

 
  

  
             
Alig confidence 


...













.

















.









..















............
Template Conservation           
          .  
  
            .
  
 


  ..


 


 
 
 
  
............
Template Sequence  PAWFEALKMVLEKIGFGDRV. DYIDYLNHSHHLYKNKTY. VKGGMPSGSG. . TSIFNSMINNLIIRTL. . . . . . . . . . . .
Template Known Secondary structure  TTTGGGT.B

TT
.
BS






..............
Template Predicted Secondary structure 


.




.







..
............
Template SS confidence 















































































   243......250.........260.. .......270.........280 .........290 .........300......
 
   248.250.........260.........270.........280.........290.........300.........310. ........320.. ..
Predicted Secondary structure 




























.






..

Query SS confidence 































































.










. .

Query Sequence  WYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRL. NMDKTKIPHVN. . DG
Query Conservation                            






  
     
     
   
   
   


 
.
  

 
    ..  
Alig confidence  ............




























.....











.




.










..

Template Conservation  ............          
 
    



 
 

   .....     
      . 
   
  


       
  
Template Sequence  . . . . . . . . . . . . LLKTYKGIDLDHLKMIAYGDDVIASYPHE. . . . . VDASLLAQSGKD. YGLTMTPADKSATFETVTWEN
Template Known Secondary structure  ............STT

GGG
TTSS
.....

.TT

STTT
SS




TTT
Template Predicted Secondary structure  ............









.....

.















Template SS confidence 















































































   309310.........320.........330....... ..340......... 350.........360.........370
 
   325....330.........340.........350
Predicted Secondary structure 






Query SS confidence 

























Query Sequence  FIFLGHRLIRKRSRYGEMRVVSTIPQ
Query Conservation    


  
                 
Alig confidence 

























Template Conservation    



 
           
 

  
Template Sequence  VTFLKRFFRADEKYPFLIHPVMPMKE
Template Known Secondary structure 

BTTB
SS
TTS

Template Predicted Secondary structure 











Template SS confidence 

























   371........380.........390......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions