Job Description Q47688 Confidence 98.48% Date Thu Jan 5 12:37:02 GMT 2012 Rank 13 Aligned Residues 276 % Identity 16% Template d1khva_ SCOP info DNA/RNA polymerases DNA/RNA polymerases RNA-dependent RNA-polymerase Resolution 2.50

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																			.	.	.	.																																							.	.	.
Query SS confidence																			.	.	.	.																																							.	.	.
Query Sequence		L	A	E	A	A	R	I	T	L	S	S	K	G	A	H	T	P	.	.	.	.	G	V	D	G	V	N	K	T	M	L	Q	A	R	L	A	V	E	L	Q	I	L	R	D	E	L	L	S	G	H	Y	Q	P	L	P	A	R	R	V	.	.	.	Y	I	P	K	S	N	G	K	L	R	P	L	G	I	P	A	L	R
Query Conservation																			.	.	.	.																																							.	.	.
Alig confidence																			.	.	.	.																																							.	.	.
Template Conservation
Template Sequence		F	K	A	A	F	N	T	L	D	L	S	T	S	C	G	P	F	V	P	G	K	K	I	D	H	V	K	D	G	V	M	D	Q	V	L	A	K	H	L	Y	K	C	W	S	V	A	N	S	G	K	A	L	H	H	I	Y	A	C	G	L	K	D	E	L	R	P	L	D	G	K	K	R	L	L	W	G	C	D	V	G
Template Known Secondary structure									S		S	S		B			S	S	S		S	B	G	G	G	T	S		S	S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																					.	.												.																																													.	.	.
Query SS confidence																					.	.												.																																													.	.	.
Query Sequence		D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	.	.	F	H	T	L	S	Y	G	F	R	P	E	.	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	.	.	.
Query Conservation																					.	.												.																																													.	.	.
Alig confidence																					.	.												.														.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.
Template Sequence		V	A	V	C	A	A	A	V	F	H	N	I	C	Y	K	L	K	M	V	A	R	F	G	P	I	A	V	G	V	D	M	T	S	R	D	V	D	V	I	I	N	N	L	T	S	K	.	.	.	.	.	.	.	.	A	S	D	F	L	C	L	D	Y	S	K	W	D	S	T	M	S	P	C	V	V	R	L	A	I	D
Template Known Secondary structure																				T	T	T	T	S	S	B		T	T			T	T	S	T													.	.	.	.	.	.	.	.		S								T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	.	.	A	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W	N	N	S	I
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		I	L	A	D	C	C	E	Q	T	E	L	T	K	S	V	V	L	T	L	K	S	H	P	M	T	I	L	D	A	M	I	V	Q	T	K	R	G	L	P	S	G	M	P	F	T	S	V	I	N	S	I	C	H	W	L	L	W	S	A	A	V	Y	K	S	C	A	E	I	G	L	H	C	S	N	L	Y	E	D	A	P
Template Known Secondary structure					T	T	B			S												S							S	S						S	S				T	T	S	T	T																								T	T										S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																											.												.	.
Query SS confidence																																																											.												.	.
Query Sequence		Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	.	N	M	D	K	T	K	I	P	H	V	N	.	.	D	G	F	I	F	L	G	H	R
Query Conservation																																																											.												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.															.						.												.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.															.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	T	Y	G	D	D	G	V	Y	A	M	T	P	M	.	.	.	M	V	S	L	L	P	A	I	I	E	N	L	R	D	.	Y	G	L	S	P	T	A	A	D	K	T	E	F	I	D	V	C	P	L	N	K	I	S	F	L	K	R	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T										.	.	.				T											.	T	T						S	S	T	T	S		S			B		G	G	G				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.															.
Template SS confidence
																					349	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		332	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	L	T	D
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions