Job Description Q47688 Confidence 41.91% Date Thu Jan 5 12:37:02 GMT 2012 Rank 27 Aligned Residues 242 % Identity 17% Template d1gx5a_ SCOP info DNA/RNA polymerases DNA/RNA polymerases RNA-dependent RNA-polymerase Resolution 1.7

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.				.	.	.	90	.	.		.	.	.	.	.	.	.	100
Predicted Secondary structure																																																						.	.	.	.	.						.	.	.							.
Query SS confidence																																																						.	.	.	.	.						.	.	.							.
Query Sequence		L	A	E	A	A	R	I	T	L	S	S	K	G	A	H	T	P	G	V	D	G	V	N	K	T	M	L	Q	A	R	L	A	V	E	L	Q	I	L	R	D	E	L	L	S	G	H	Y	Q	P	L	P	A	.	.	.	.	.	R	R	V	Y	I	.	.	.	P	K	S	N	G	K	.	L	R	P	L	G	I	P	A
Query Conservation																																																						.	.	.	.	.						.	.	.							.
Alig confidence																																																						.	.	.	.	.						.	.	.							.
Template Conservation
Template Sequence		V	E	E	A	C	K	L	T	P	P	H	S	A	K	S	K	F	G	Y	G	A	K	D	V	R	N	L	S	S	K	A	V	N	H	I	H	S	V	W	K	D	L	L	E	D	T	V	T	P	I	D	T	T	I	X	A	K	N	E	V	F	C	V	Q	P	E	K	G	G	R	K	P	A	R	L	I	V	F	P	D
Template Known Secondary structure								T	S		T	T					T	T	S								T	T																			S	S	S																B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	A	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																															.	.																	.	.	.																												.	.	.
Template Conservation																															.	.																	.	.	.
Template Sequence		L	G	V	R	V	C	E	K	X	A	L	Y	D	V	V	S	T	L	P	Q	V	V	X	G	S	S	Y	G	F	.	.	Q	Y	S	P	G	Q	R	V	E	F	L	V	N	T	W	K	.	.	.	S	K	K	N	P	X	G	F	S	Y	D	T	R	C	F	D	S	T	V	T	E	N	D	I	R	V	E	E	S	I
Template Known Secondary structure																	T	T							G	G	G	B	G	G	.	.	G																.	.	.		S	S	S								B	T	T
Template Predicted Secondary structure																															.	.																	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
			178	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.														.	.									.	.	.
Query SS confidence		.														.	.									.	.	.
Query Sequence		.	V	R	R	R	I	S	D	A	R	F	M	T	L	.	.	L	W	K	T	I	K	A	G	.	.	.	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W	N
Query Conservation		.														.	.									.	.	.
Alig confidence		.														.	.									.	.	.								.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																				.																																					.	.	.	.	.	.	.	.	.
Template Sequence		Y	Q	C	C	D	L	A	P	E	A	R	Q	A	I	K	S	L	T	E	R	L	Y	I	G	G	P	L	T	N	S	K	G	Q	N	.	C	G	Y	R	R	C	R	A	S	G	V	L	T	T	S	C	G	N	T	L	T	C	Y	L	K	A	S	A	A	C	R	A	A	K	L	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	B																T	T	S							T	T	S			.						S			T	T	S	T	T																				T	T			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	.	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G
Query Conservation																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	T	X	L	V	N	G	D	D	L	V	V	I	C	E	S	A	G	T	Q	E	D	A	A	S	L	R	V	F	T	E	A	X	T	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions