Job Description Q47688 Confidence 98.09% Date Thu Jan 5 12:37:02 GMT 2012 Rank 18 Aligned Residues 211 % Identity 16% Template c3nahC_ PDB info PDB header:transferase Chain: C: PDB Molecule:rna dependent rna polymerase; PDBTitle: crystal structures and functional analysis of murine norovirus rna-2 dependent rna polymerase Resolution 2.75 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H
Query Conservation
Alig confidence																																.	.																										.	.	.	.	.
Template Conservation																																.	.																										.	.	.	.	.
Template Sequence		I	K	K	R	L	L	W	G	S	D	L	G	T	M	I	R	A	A	R	A	F	G	P	F	C	D	A	L	K	E	.	.	T	C	I	F	N	P	I	R	V	G	M	S	M	N	E	D	G	P	F	I	F	A	R	H	A	.	.	.	.	.	N	F	R	Y	H	M	D	A	D	Y	T	R	W	D	S	T	Q	Q
Template Known Secondary structure																																.	.	T	T	T	T	S	S	B		T	T																.	.	.	.	.	T	S	S								S	S		G	G	G
Template Predicted Secondary structure																																.	.																										.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.						.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		171	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure									.	.	.																						.	.
Query SS confidence									.	.	.																						.	.
Query Sequence		H	R	L	L	M	K	A	.	.	.	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	.	.	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K
Query Conservation									.	.	.																						.	.
Alig confidence									.	.	.																						.	.
Template Conservation
Template Sequence		R	A	I	L	K	R	A	G	D	I	M	V	R	L	S	P	E	P	D	L	A	R	V	V	M	D	D	L	L	A	P	S	L	L	D	V	G	D	Y	K	I	V	V	E	E	G	L	P	S	G	C	P	C	T	T	Q	L	N	S	L	A	H	W	I	L	T	L	C	A	M	V	E	V	T	R	V	D	P	D	I
Template Known Secondary structure															T	S	S														S	S						S	S							S	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.			.	.	320	.	.
Predicted Secondary structure																																																																				.							.	.
Query SS confidence																																																																				.							.	.
Query Sequence		D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	.	N	M	D	K	T	K	.	.	I	P	H	V	N
Query Conservation																																																																				.							.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.						.							.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.
Template Sequence		V	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	E	F	S	F	Y	G	D	D	E	V	V	S	T	N	L	E	.	.	.	.	.	L	D	M	V	K	Y	T	M	A	L	R	R	.	Y	G	L	L	P	T	R	A	D	K	E	E	G	P	L	E	R	R	Q
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T							S	S		.	.	.	.	.													.		T						T	T	T			S	S				B	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.													.
Template SS confidence
		335	.	.																							.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.						.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
				323	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	G	F	I	F	L	G	H	R	L	I	R	K	R
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		T	L	Q	G	I	S	F	L	R	R	A	I	V	G	D	Q
Template Known Secondary structure			S	T	T				T	T							T
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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