Job Description Q47688 Confidence 98.67% Date Thu Jan 5 12:37:02 GMT 2012 Rank 8 Aligned Residues 221 % Identity 15% Template c3n6mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-dependent rna polymerase; PDBTitle: crystal structure of ev71 rdrp in complex with gtp Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H
Query Conservation
Alig confidence																																	.																									.	.	.	.	.	.	.
Template Conservation																																	.																									.	.	.	.	.	.	.
Template Sequence		G	K	S	R	L	I	E	A	S	S	L	N	D	S	V	Y	L	R	M	A	F	G	H	L	Y	E	T	F	H	A	N	.	P	G	T	I	T	G	S	A	V	G	C	N	P	D	T	F	W	S	K	L	P	I	L	L	.	.	.	.	.	.	.	P	G	S	L	F	A	F	D	Y	S	G	Y	D	A	S	L	S
Template Known Secondary structure		T																															.	T	B	T	T	T	T	B		T	T														S	.	.	.	.	.	.	.		S									S
Template Predicted Secondary structure																																	.																									.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		171	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		H	R	.	.	.	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R
Query Conservation				.	.	.
Alig confidence				.	.	.																																																																							.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		P	V	W	F	R	A	L	E	L	V	L	R	E	I	G	Y	S	E	G	A	I	S	L	I	E	G	I	N	H	T	H	H	V	Y	R	N	K	T	Y	C	V	L	G	G	M	P	S	G	C	S	G	T	S	I	F	N	S	M	I	N	N	I	I	I	R	A	L	L	I	K	T	F	K	G	I	.	.	.	.	.
Template Known Secondary structure															T	T							G	G	G											T	T							S	S				S		S	T	T																				S	T	T		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.			.
Predicted Secondary structure																																																																		.													.	.
Query SS confidence																																																																		.													.	.
Query Sequence		W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	.	N	M	D	K	T	K	I	P	H	V	N	D	.	.	G
Query Conservation																																																																		.													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.						.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	D	E	L	N	M	V	A	Y	G	D	D	V	L	A	S	Y	P	F	P	.	.	.	.	.	I	D	C	L	E	L	A	K	T	G	K	E	.	Y	G	L	T	M	T	P	A	D	K	S	P	C	F	N	E	V	N	W	D	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G							T	T							S	S		.	.	.	.	.													.	T	T						S	S	S	S	S	S		S				T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.													.
Template SS confidence
																						318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.						.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	F	L	G	H	R	L	I	R	K	R	S	R	Y	G	E	M	R	V	V	S	T	I	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	F	L	K	R	G	F	L	P	D	E	Q	F	P	F	L	I	H	P	T	M	P	M	R	E
Template Known Secondary structure				B	T	T	B						S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions