Job Description Q47688 Confidence 88.73% Date Thu Jan 5 12:37:02 GMT 2012 Rank 24 Aligned Residues 180 % Identity 16% Template c3mmpG_ PDB info PDB header:transferase Chain: G: PDB Molecule:rna-directed rna polymerase beta chain; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins Resolution 2.50 Å

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		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	V	Y	I	P	K	S	N	G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G
Query Conservation
Alig confidence																																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		N	K	A	V	T	V	P	K	N	S	K	T	D	R	C	I	A	I	E	P	G	W	N	M	F	F	Q	L	G	I	G	G	I	L	R	D	R	L	R	C	W	G	I	D	L	N	.	.	.	.	.	D	Q	T	I	N	Q	R	R	A	H	E	G	S	V	T	N	N	.	.	.	.	.	.	.	.	L	A	T	V
Template Known Secondary structure											S	S																												G	G	G	T			T	T	.	.	.	.	.		T														S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.									270	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		D	L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	.	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L
Query Conservation																																											.
Alig confidence																				.	.	.	.	.																			.
Template Conservation																				.	.	.	.	.
Template Sequence		D	L	S	A	A	S	D	S	I	S	L	A	L	C	E	L	L	L	.	.	.	.	.	P	P	G	W	F	E	V	L	M	D	L	R	S	P	K	G	R	L	P	D	G	S	V	V	T	Y	E	K	I	S	S	M	G	N	G	Y	T	F	E	L	E	S	L	I	F	A	S	L	A	R	S	V	C	E	I	L	D
Template Known Secondary structure			B	T	T	G	G	G			B								S	.	.	.	.	.												S		S					T	T	S						S	B	S			T	T	S	T	T																					T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	A	R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	D	K	T
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template Sequence		L	D	S	S	E	V	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	D	D	I	I	L	P	S	C	A	V	.	.	.	.	.	.	.	.	P	A	L	R	E	V	F	K	Y	.	V	G	F	T	T	N	T	K	K	T
Template Known Secondary structure				G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						G	G	G		.	.	.	.	.	.	.	.										.	T	T			B		G	G	G
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template SS confidence
		349	350	.	.	.	.	.	.																														.	.	.	360	.	.	.	.	.	.	.	.									.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions