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Job DescriptionQ47688
Confidence98.33%DateThu Jan 5 12:37:02 GMT 2012
Rank15Aligned Residues194
% Identity18%Templatec3kk1B_
PDB info PDB header:transferase/dnaChain: B: PDB Molecule:reverse transcriptase p51 subunit; PDBTitle: hiv-1 reverse transcriptase-dna complex with nuceotide inhibitor gs-2 9148-diphosphate bound in nucleotide site
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70....... ..80......... 90.........100.........110.........120.........
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Query Sequence  QARLAVELQILRDELLSGHYQ. . . . . . PLPARRVYIPKS. NGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGF
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Template Sequence  EEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK. . . . . .
Template Known Secondary structure  TTS

TTS

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   28.30.........40.........50.........60.........70.........80.........90.........100.
 
   130.........140.........150.........160.........170.........180.........190.........200.........
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Query Sequence  RPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAAS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . KKKSVTVLDVGDAYFSVPLDEDFRKYTAF. . . . . . . . . . . . TIPSINNETPGIRYQY
Template Known Secondary structure  .......................T
STTGGGGGSB

GGG
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GGGSS

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   102.......110.........120.........130 .........140......
 
   210.........220.........230.........240.........250.........260.........270.........280.........
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Query Sequence  EGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTK
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Template Sequence  NVLPQGWKGSPAIFQSSMTKILEPFRKQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NPDIVIYQYMDDLYVGSDLEI
Template Known Secondary structure  SB

TT
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   147..150.........160.........170.... .....180.........190.....
 
   290.........300.........310.........320.........
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Query Sequence  AQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLG
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Template Sequence  GQHRTKIEELRQH. . . . . LLRWGLMGYEL. . HPDKWTVQP
Template Known Secondary structure  T.....TTT





B..
GGG




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   196...200........ .210......... 220........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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