Job Description Q47688 Confidence 72.64% Date Thu Jan 5 12:37:02 GMT 2012 Rank 25 Aligned Residues 179 % Identity 17% Template c3agqA_ PDB info PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii Resolution 3.22 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	V	Y	I	P	K	S	N	G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D
Query Conservation
Alig confidence																																															.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		K	A	V	T	V	P	K	N	S	K	T	D	R	C	I	A	I	E	P	G	W	N	M	F	F	Q	L	G	I	G	G	I	L	R	D	R	L	R	C	W	G	I	D	L	N	.	.	.	.	.	D	Q	T	I	N	Q	R	R	A	H	E	G	S	V	T	N	N	.	.	.	.	.	.	.	.	L	A	T	V	D
Template Known Secondary structure										S	S																											G	G	G	G	T			S	S	.	.	.	.	.		T																.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		902	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.						.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.									.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	.	G	H	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S
Query Conservation																																						.
Alig confidence																			.	.	.	.	.															.
Template Conservation																			.	.	.	.	.
Template Sequence		L	S	A	A	S	D	S	I	S	L	A	L	C	E	L	L	L	.	.	.	.	.	P	P	G	W	F	E	V	L	M	D	L	R	S	P	K	G	R	L	P	D	G	S	V	V	T	Y	E	K	I	S	S	M	G	N	G	Y	T	F	E	L	E	S	L	I	F	A	S	L	A	R	S	V	C	E	I	L	D	L
Template Known Secondary structure		B	S	S		T	T			B								S	.	.	.	.	.												S							S	S	S						S	B	S			T	T	S	T	T																				T	T
Template Predicted Secondary structure																			.	.	.	.	.
Template SS confidence
		969	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.						.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	D	K	T
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template Sequence		D	S	S	E	V	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	D	D	I	I	L	P	S	C	A	V	.	.	.	.	.	.	.	.	P	A	L	R	E	V	F	K	Y	.	V	G	F	T	T	N	T	K	K	T
Template Known Secondary structure			G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T						T	T			.	.	.	.	.	.	.	.										.		S			B		T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.										.
Template SS confidence
		1044	.	.	.	.	.	1050																														.	.	.	.	.	.	.	.	.	1060	.	.									.	.	.	.	.	.	.	1070	.		.	.	.	.	.	.	.	.	1080	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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