Job Description Q47688 Confidence 98.09% Date Thu Jan 5 12:37:02 GMT 2012 Rank 17 Aligned Residues 209 % Identity 14% Template c2uutA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna-directed rna polymerase; PDBTitle: the 2.4 angstrom resolution structure of the d346g mutant2 of the sapporo virus rdrp polymerase Resolution 2.4 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	.	.	S	D	F	H	T	L	S	Y	G	F	R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T
Query Conservation																															.	.
Alig confidence																															.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		G	K	R	R	L	L	W	G	C	D	A	A	T	T	L	I	A	T	A	A	F	K	A	V	A	T	R	L	Q	V	V	T	P	M	T	P	V	A	V	G	I	N	M	D	S	V	Q	M	Q	V	M	N	D	S	L	.	.	.	.	.	.	.	.	.	K	G	G	V	L	Y	C	L	D	Y	S	K	W	D	S	T
Template Known Secondary structure		T																														T	T	T	S	S	S	B		T	T			T	T	S									T	T	.	.	.	.	.	.	.	.	.	T	T	S								B	T	T	T	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.										.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure													.	.	.	.																					.
Query SS confidence													.	.	.	.																					.
Query Sequence		V	H	H	R	L	L	M	K	A	V	R	.	.	.	.	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	.	I	D	V	G	L	F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A
Query Conservation													.	.	.	.																					.
Alig confidence													.	.	.	.																					.
Template Conservation
Template Sequence		Q	N	P	A	V	T	A	A	S	L	A	I	L	E	R	F	A	E	P	H	P	I	V	S	C	A	I	E	A	L	S	S	P	A	E	G	Y	V	N	D	I	K	F	V	T	R	G	G	L	P	S	G	M	P	F	T	S	V	V	N	S	I	N	H	M	I	Y	V	A	A	A	I	L	Q	A	Y	E	S	H	N
Template Known Secondary structure																T	T	B															S							T	T						S	S	S			T	T	S	T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	.	D	K	T	K	I	P	H	V	N
Query Conservation																																																																								.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.															.								.				.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.															.												.	.	.	.	.	.
Template Sequence		V	P	Y	T	G	N	V	F	Q	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	H	T	Y	G	G	D	C	M	Y	S	V	C	P	A	.	.	.	T	A	S	I	F	H	T	V	L	A	N	L	T	S	.	Y	G	L	K	P	T	A	I	K	P	T	.	.	.	.	.	.
Template Known Secondary structure						S						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T										.	.	.				T											.	T	T		B							B	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.															.												.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340																			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	F	I	F	L	G	H	R	L	I	R	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	P	V	F	L	K	R	T	F	T	Q	T	P
Template Known Secondary structure		S	S				T	T							T
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions