Job Description Q47688 Confidence 97.87% Date Thu Jan 5 12:37:02 GMT 2012 Rank 20 Aligned Residues 240 % Identity 15% Template c2b43D_ PDB info PDB header:viral protein Chain: D: PDB Molecule:non-structural polyprotein; PDBTitle: crystal structure of the norwalk virus rna dependent rna polymerase2 from strain hu/nlv/dresden174/1997/ge Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.							.	.																																		.	.
Query SS confidence																									.	.	.	.	.	.							.	.																																		.	.
Query Sequence		L	A	V	E	L	Q	I	L	R	D	E	L	L	S	G	H	Y	Q	P	L	P	A	R	.	.	.	.	.	.	R	V	Y	I	P	K	.	.	S	N	G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	.	.	F	H	T	L	S	Y	G	F
Query Conservation																									.	.	.	.	.	.							.	.																																		.	.
Alig confidence																									.	.	.	.	.	.							.	.																																		.	.
Template Conservation
Template Sequence		L	A	D	Q	A	S	K	A	N	L	M	F	E	G	G	K	N	M	T	P	V	Y	T	G	A	L	K	D	E	L	V	K	T	D	K	I	Y	G	K	I	K	K	R	L	L	W	G	S	D	L	A	T	M	I	R	C	A	R	A	F	G	G	L	M	D	E	L	K	A	H	C	V	T	L	P	I	R	V	G	M
Template Known Secondary structure																T																		T					S	S																															T	T	T	T	S	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.
Predicted Secondary structure																																														.	.	.																												.	.
Query SS confidence																																														.	.	.																												.	.
Query Sequence		R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H	H	R	L	.	.	.	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	.	.	D	V	G	L
Query Conservation																																														.	.	.																												.	.
Alig confidence															.	.	.	.	.	.	.	.	.																							.	.	.																												.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		N	M	N	E	D	G	P	I	I	F	E	R	H	.	.	.	.	.	.	.	.	.	S	R	Y	K	Y	H	Y	D	A	D	Y	S	R	W	D	S	T	Q	Q	R	A	V	L	A	A	A	L	E	I	M	V	K	F	S	S	E	P	H	L	A	Q	V	V	A	E	D	L	L	S	P	S	V	V	D	V	G	D	F
Template Known Secondary structure			T	T	T										.	.	.	.	.	.	.	.	.	T	T	S	S							B	S	S	T	G	G	G																T	S	S														S							S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.										.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	A	A	S	E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	S	I	N	E	G	L	P	S	G	V	P	C	T	S	Q	W	N	S	I	A	H	W	L	L	T	L	C	A	L	S	E	V	T	N	L	S	P	D	I	I	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	L	F	S	F	Y	G	D	D	E	I	V	S
Template Known Secondary structure							S	S				S		T	T																						T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.																							.	.	.	.	.	340	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.						.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		V	K	G	T	K	A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	.	.	.	.	.	N	M	D	K	T	K	I	P	H	V	N	D	G	F	I	F	L	G	H	R	L	I	R	K	R
Query Conservation																													.	.	.	.	.
Alig confidence						.	.	.	.	.													.						.	.	.	.	.
Template Conservation						.	.	.	.	.													.
Template Sequence		T	D	I	K	.	.	.	.	.	L	D	P	E	K	L	T	A	K	L	K	E	.	Y	G	L	K	P	T	R	P	D	K	T	E	G	P	L	V	I	S	E	D	L	N	G	L	T	F	L	R	R	T	V	T	R	D	P
Template Known Secondary structure			S	S		.	.	.	.	.													.	T	T			B			S	S	S		S	S					B	S			T	T				T	T							T
Template Predicted Secondary structure						.	.	.	.	.													.
Template SS confidence
		349	350	.	.						.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions