Job Description Q47688 Confidence 99.53% Date Thu Jan 5 12:37:02 GMT 2012 Rank 2 Aligned Residues 204 % Identity 20% Template c1rthA_ PDB info PDB header:nucleotidyltransferase Chain: A: PDB Molecule:hiv-1 reverse transcriptase; PDBTitle: high resolution structures of hiv-1 rt from four rt-2 inhibitor complexes Resolution 2.20 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.			.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.					.	.									.
Query SS confidence																								.	.	.	.					.	.									.
Query Sequence		Q	A	R	L	A	V	E	L	Q	I	L	R	D	E	L	L	S	G	H	Y	Q	P	.	.	.	.	L	P	A	R	.	.	R	V	Y	I	P	K	S	N	.	G	K	L	R	P	L	G	I	P	A	L	R	D	R	I	V	Q	R	A	M	L	M	A	M	E	P	I	W	E	S	D	F	H	T	L	S	Y	G	F
Query Conservation																								.	.	.	.					.	.									.
Alig confidence																								.	.	.	.					.	.									.										.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.
Template Sequence		E	E	K	I	K	A	L	V	E	I	C	T	E	M	E	K	E	G	K	I	S	K	I	G	P	E	N	P	Y	N	T	P	V	F	A	I	K	K	K	D	S	T	K	W	R	K	L	V	D	F	.	.	.	.	.	.	.	.	R	E	L	N	K	R	T	Q	D	F	W	E	V	Q	L	G	I	P	H	P	A	G
Template Known Secondary structure																		T	T	S						S	S				B	B								T	T		S	S								.	.	.	.	.	.	.	.							B				S		S			S				G	G	G
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.									.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	E	R	S	V	H	H	A	I	R	T	V	K	L	Q	L	T	D	C	G	E	T	R	G	R	W	V	I	E	G	D	L	S	S	Y	F	D	T	V	H	H	R	L	L	M	K	A	V	R	R	R	I	S	D	A	R	F	M	T	L	L	W	K	T	I	K	A	G	H	I	D	V	G	L	F	R	A	A	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	K	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	T	V	L	D	V	G	D	A	Y	F	S	V	P	L	D	E	D	F	R	K	Y	T	A	F	.	.	.	.	.	.	.	.	.	.	.	.	T	I	P	S	I	N	N	E	T	P	G	I	R	Y	Q	Y
Template Known Secondary structure						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G	T	T	T	S	B			T	T	G	G	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.					T	T			S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.																						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130													.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	V	P	Q	G	G	V	I	S	P	L	L	S	N	I	M	L	N	E	F	D	Q	Y	L	H	E	R	Y	L	S	G	K	A	R	K	D	R	W	Y	W	N	N	S	I	Q	R	G	R	S	T	A	V	R	E	N	W	Q	W	K	P	A	V	A	Y	C	R	Y	A	D	D	F	V	L	I	V	K	G	T	K
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	L	P	Q	G	W	K	G	S	P	A	I	F	Q	S	S	M	T	K	I	L	E	P	F	R	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	D	I	V	I	Y	Q	Y	M	D	D	L	Y	V	G	S	D	L	E	I
Template Known Secondary structure		S	B			T	T		T	T																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T							T	T								S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																																.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	E	A	I	R	E	E	C	R	G	V	L	E	G	S	L	K	L	R	L	N	M	D	K	T	K	I	P	H	V	N	D	G	F	I	F	L	G	H	R	L	I	R	K	R
Query Conservation
Alig confidence																		.													.	.	.
Template Conservation																		.													.	.	.
Template Sequence		G	Q	H	R	T	K	I	E	E	L	R	Q	H	L	L	R	.	W	G	L	T	T	P	D	K	K	H	Q	K	.	.	.	E	P	P	F	L	W	M	G	Y	E	L	H	P	D	K
Template Known Secondary structure																		.	T	T						G	G	G			.	.	.		S	S				T	T					T	T
Template Predicted Secondary structure																		.													.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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